PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13804.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 561aa    MW: 64237.3 Da    PI: 8.7556
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13804.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.32.4e-081293789
        FAR1  7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                A+ +GF ++ks++k +   g+   +  +C + gk +   k+  ++ +r+++++++++C  k+k+   +dgk+ v+ +   HnHe+
  Dca13804.1 12 AHGLGFGLCKSSNKPR---GTREYHLIRCERGGKYNGPFKDplKVPKRKKTTSKKIECPFKIKIVSGTDGKFAVMPMYGFHNHEM 93
                8899******998877...555688899******99988888899**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-51293IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MKMAYTWAQA IAHGLGFGLC KSSNKPRGTR EYHLIRCERG GKYNGPFKDP LKVPKRKKTT  60
SKKIECPFKI KIVSGTDGKF AVMPMYGFHN HEMGKFFDGH RQMTSFSDKQ IDYVRVKVVS  120
EIKTANIRLG YKEKYPDQPQ PNKRHFDSVV AKGESNPLMV HYLSETWIPS DVMFVKCFTN  180
KVLHFGTTMT SRVESAHAVL KKMLGSSTRA CDGVWLAFHA VMTNQHIDIN SALEVSRSRH  240
HHNREGDGLS SVCTDIDLFE ATVEAARCQP APMRRMIIET ANQILHPDLS SVGDPTVKER  300
PKGRPKIGNS TQRNPSQFEH TRSKYPVAPE RRDRTCNASS TKNVGGPWEC DYVDVDGSEF  360
YYSYLVPPLL LEYLVGWFDP HADGHCGFRI FAHAMRKDQD EWRAMRRALL REVRDPMYRM  420
IYPGDYDVGR VLLRIHFEGN SGCGDAHWMN SLDCFGFATI NNWTVCIISC GERYPGMYVW  480
DSSFTCLPLR AEEGVTGPDG ILWILHTGNH YVKVYVDEDM PMPPVCILWE TTRQNSVAGW  540
HNTYRERMTR WRQIFSDSTT N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-