PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13835.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 877aa MW: 95974.3 Da PI: 5.7747

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13835.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l ++ Dca13835.1 333 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRKD-PEGKLIMG 429 99************************555556667***********99899999999.*******************654.78878887 PP EE- CS B3 96 vfr 98 +++ Dca13835.1 430 FRK 432 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.81E-20	330	433	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.0E-29	330	438	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.95E-23	331	432	No hit	No description
Pfam	PF02362	5.8E-16	333	432	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-21	333	434	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.265	333	434	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.401	572	622	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.2E-12	577	619	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MAMKTCMNIT CATTSSAEWK TGWKLRSGEL AILCDKCGYA YEQRIYCEEF HSDDSGWREC 60 VDCGKRLHCG CITSLSLIEL LDAGGVKCIS CARSPLPKSI RNGVISKKHG LGSEMENAEG 120 VGNYKDKIES NQPSSMLHSP NTNATSSMLK QDRIVFPSTE AIATTQPPPP LPTRADPPVI 180 SGSWTIGTPW ASTLAQTSVG SFLKDRRDGP SSITQNRNDF ESIAQPNLNI SLCAPGKFQF 240 TSGIVIKDKE QRKTSNAFSQ GFIPPSLAPT PPKLPVSPAP NSNMNTTPQS RVAKSPFEGR 300 GRHQLLPRYW PRITEQELQQ ISGDPNCTIT PLFEKVLSAS DAGRIGRLVL PKACAEAYFP 360 PISQSEGLPI KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRK 420 DPEGKLIMGF RKASPSMQDM PVTSSSTGLP QSLKGSTDSH MNSLSRQLDS ACNVNLVNGE 480 KLVEPAEGGL LTPPVTMTEK KKGRNVGAKG KRLLIDNQDV QALKLTWEEV QGMLRPPPNA 540 MPNVVEIDGF EIEEYDEPPV IGKSSVFGAH PSGVIDQWVQ CDGCSKWRRL PADILIPPKW 600 TCADNSSDPA RCFCSAPDEL SPEELEKLSN LSKDSKKKRA AIVDRVIQEQ ESSGLSALAN 660 AAGLGVDPDE AGTSTAAITT KHPRHRPGCS CIVCIQPPSG KGKHDSTCTC TVCMTVKRRF 720 RTLMMRKKKR QSNPDVGAAL KTRRKKKSRG EEDDKADVEN DETNIEMDSL LTELTQIDDD 780 SVLDLNDNPE LEENSNTTNG QADLTSLLHF VKQNSLTFWA PEEQANPSAQ SSQMAPEIEG 840 ERVEEHPVSQ AAPEEQVNPS EGSCEAENTD KLESDPQ

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MAMKTCMNIT CATTSSAEWK TGWKLRSGEL AILCDKCGYA YEQRIYCEEF HSDDSGWREC  60
VDCGKRLHCG CITSLSLIEL LDAGGVKCIS CARSPLPKSI RNGVISKKHG LGSEMENAEG  120
VGNYKDKIES NQPSSMLHSP NTNATSSMLK QDRIVFPSTE AIATTQPPPP LPTRADPPVI  180
SGSWTIGTPW ASTLAQTSVG SFLKDRRDGP SSITQNRNDF ESIAQPNLNI SLCAPGKFQF  240
TSGIVIKDKE QRKTSNAFSQ GFIPPSLAPT PPKLPVSPAP NSNMNTTPQS RVAKSPFEGR  300
GRHQLLPRYW PRITEQELQQ ISGDPNCTIT PLFEKVLSAS DAGRIGRLVL PKACAEAYFP  360
PISQSEGLPI KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRK  420
DPEGKLIMGF RKASPSMQDM PVTSSSTGLP QSLKGSTDSH MNSLSRQLDS ACNVNLVNGE  480
KLVEPAEGGL LTPPVTMTEK KKGRNVGAKG KRLLIDNQDV QALKLTWEEV QGMLRPPPNA  540
MPNVVEIDGF EIEEYDEPPV IGKSSVFGAH PSGVIDQWVQ CDGCSKWRRL PADILIPPKW  600
TCADNSSDPA RCFCSAPDEL SPEELEKLSN LSKDSKKKRA AIVDRVIQEQ ESSGLSALAN  660
AAGLGVDPDE AGTSTAAITT KHPRHRPGCS CIVCIQPPSG KGKHDSTCTC TVCMTVKRRF  720
RTLMMRKKKR QSNPDVGAAL KTRRKKKSRG EEDDKADVEN DETNIEMDSL LTELTQIDDD  780
SVLDLNDNPE LEENSNTTNG QADLTSLLHF VKQNSLTFWA PEEQANPSAQ SSQMAPEIEG  840
ERVEEHPVSQ AAPEEQVNPS EGSCEAENTD KLESDPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-67	311	434	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	716	727	KRRFRTLMMRKK
2	716	729	KRRFRTLMMRKKKR
3	727	746	KKRQSNPDVGAALKTRRKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683488.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBL	A0A0K9Q8H6	0.0	A0A0K9Q8H6_SPIOL; Uncharacterized protein
STRING	XP_010683488.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1