PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13893.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 476aa MW: 54986.5 Da PI: 8.3894

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13893.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40	1.3e-12	54	147	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfYn Y+ GF +rk + k+ r+g+ +++ vC++ g+ +k+ +e+ r +++ ++gCka+++ +gk+ v+++ +eH Hel Dca13893.1 54 KFYNIYGIGSGFGTRKYTAKHW-RDGTLKSKLIVCNRVGSYYAKKNPnkeddsEETIGRITSVLNVGCKARIRFFCL-NGKFTVNEFIEEHKHELL 147 6**************99988.8888*******9876666554455544445557778899****998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-10	54	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-29	269	361	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MGDMVEVNSD DCISSSLEGV DLNGINEGAL CENVERDFKP YVGQEFVSVE EVAKFYNIYG 60 IGSGFGTRKY TAKHWRDGTL KSKLIVCNRV GSYYAKKNPN KEDDSEETIG RITSVLNVGC 120 KARIRFFCLN GKFTVNEFIE EHKHELLSVQ EREFKKLASN LTDYHKNFIV SNIRLKIGAT 180 KTYRMIKEHV NGFSNVGATL NHFKNFQRDL KCFIHEKDGQ LFIDRFKSMA ENRSGFFFDY 240 DVDADGSLRR AIWADAVAIR NYEVFGDALS FDPTYSTNKY SMIFTPFTGV DYHKRTITFS 300 SELVANEDYE SFNWVFDRFL KAMGGKEPEY IITDQDPAII KSVGHIFKRS RHRFCMWHIM 360 NKVPVKFGGS SSGLTEFVRK LNDIIWYVEI GAADFDCRWL EIMNEHGVGK GDWFEECFSI 420 RKQWVARPGA LDRQRYLPHR VFRPPGHKVR PPVRLATASR HQFEQLFLGL SHAMCR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MGDMVEVNSD DCISSSLEGV DLNGINEGAL CENVERDFKP YVGQEFVSVE EVAKFYNIYG  60
IGSGFGTRKY TAKHWRDGTL KSKLIVCNRV GSYYAKKNPN KEDDSEETIG RITSVLNVGC  120
KARIRFFCLN GKFTVNEFIE EHKHELLSVQ EREFKKLASN LTDYHKNFIV SNIRLKIGAT  180
KTYRMIKEHV NGFSNVGATL NHFKNFQRDL KCFIHEKDGQ LFIDRFKSMA ENRSGFFFDY  240
DVDADGSLRR AIWADAVAIR NYEVFGDALS FDPTYSTNKY SMIFTPFTGV DYHKRTITFS  300
SELVANEDYE SFNWVFDRFL KAMGGKEPEY IITDQDPAII KSVGHIFKRS RHRFCMWHIM  360
NKVPVKFGGS SSGLTEFVRK LNDIIWYVEI GAADFDCRWL EIMNEHGVGK GDWFEECFSI  420
RKQWVARPGA LDRQRYLPHR VFRPPGHKVR PPVRLATASR HQFEQLFLGL SHAMCR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-55	FAR1-related sequence 5