PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13909.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 137aa MW: 15597.6 Da PI: 6.8002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13909.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	5.1e-08	2	37	56	91
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++tr +Cka ++ k + dg we+ + l+HnH+l+p Dca13909.1 2 SSTRSKCKAWIRTKINGDGLWEIVDHILDHNHPLTP 37 579******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-5	2	37	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MSSTRSKCKA WIRTKINGDG LWEIVDHILD HNHPLTPPQW QHHHRSERRI TTEEGEVIQI 60 MTEAMVPPSV QYRIAAATAG GEEFVGHTKR DHINFVNRIK MHAIEGGDAS TLVNLLAKRQ 120 TEDPGFFYRV EFGEGVD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010689746.1	1e-39	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-16	FAR1-related sequence 5