PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13941.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 748aa MW: 86603.8 Da PI: 8.4081

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13941.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.4	6.5e-15	49	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY+ YA +GF+ r+ ++++ r+g+ + vC++eg+ e++k++ + r+++ +r+gC+a+++ + +g+ +v+ +++ HnHel+ Dca13941.1 49 KFYKIYALACGFTSRRWSTSHW-RDGTLQFKLVVCNREGFWESKKQRkakaegCVGDGRKNKLQRVGCRARIRFFVK-NGVIRVDVFNEFHNHELV 142 6************9998887.888899*******99998885555555555569**********999.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-11	49	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-29	265	356	IPR018289	MULE transposase domain
PROSITE pattern	PS01007	0	329	353	IPR001207	Transposase, mutator type
PROSITE profile	PS50966	9.878	546	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-6	547	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-4	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006313	Biological Process	transposition, DNA-mediated
GO:0003677	Molecular Function	DNA binding
GO:0004803	Molecular Function	transposase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGECYQDGYG GGVNGVEEQF GPHDFCTRLE KEFTPFVGQE FDDLETGIKF YKIYALACGF 60 TSRRWSTSHW RDGTLQFKLV VCNREGFWES KKQRKAKAEG CVGDGRKNKL QRVGCRARIR 120 FFVKNGVIRV DVFNEFHNHE LVSPEHRQFQ KMARHLTKYH KRLILANSRL NIGATKTYRM 180 FKELVDGFEN VGATLNDFKN FKRDVNCFIH DRDGQLFVDH LVNLKETRPG FYFDYDVDSK 240 GRLRRVIWAD DYARKSYAVF GDGLAFDPTY STNKYSMVFT PFTGVDNHRK SITFGGALIA 300 SEDYESFVWV FTRFLFAMEG KEPSYIITDQ DPGIIKAVKE VFTIARHRFC MWHIMNKVPS 360 KFGVTRPDYQ EFLKKLNGII WDREISGVDF DVQWDEIMVN HGVGAADWFK ETFEIRRQWV 420 MAHCKDIKIG GIMRTTQRSE SENNFFKRFE CKSGTLVEFW MRFESAMEQQ RHNHRGLDNA 480 NSHSMPQLLG CFDIEKDAAR IFTHVIFEEF QEELRYSMTS CICKGYREDG PYEVTLVRDS 540 VRDRVFEVRY NSDTNDAQCS CGLHDQNGII CRHVLWILSC HGLKKIPDGL VARRWRKNAL 600 KSLEESVLVG SNEEDGKFVE MSKLWEEFQE TLGVVRGLDG DKIMKLTTLI REFREAHCCA 660 AIVPLSKDAE IEELLGVKSS SAVSILPPKQ SKNKGSGKRM LSNKTKAVEI AKKAKRLCRN 720 CKQMAHHDKR NCPNAFVESR DDVVESVC

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGECYQDGYG GGVNGVEEQF GPHDFCTRLE KEFTPFVGQE FDDLETGIKF YKIYALACGF  60
TSRRWSTSHW RDGTLQFKLV VCNREGFWES KKQRKAKAEG CVGDGRKNKL QRVGCRARIR  120
FFVKNGVIRV DVFNEFHNHE LVSPEHRQFQ KMARHLTKYH KRLILANSRL NIGATKTYRM  180
FKELVDGFEN VGATLNDFKN FKRDVNCFIH DRDGQLFVDH LVNLKETRPG FYFDYDVDSK  240
GRLRRVIWAD DYARKSYAVF GDGLAFDPTY STNKYSMVFT PFTGVDNHRK SITFGGALIA  300
SEDYESFVWV FTRFLFAMEG KEPSYIITDQ DPGIIKAVKE VFTIARHRFC MWHIMNKVPS  360
KFGVTRPDYQ EFLKKLNGII WDREISGVDF DVQWDEIMVN HGVGAADWFK ETFEIRRQWV  420
MAHCKDIKIG GIMRTTQRSE SENNFFKRFE CKSGTLVEFW MRFESAMEQQ RHNHRGLDNA  480
NSHSMPQLLG CFDIEKDAAR IFTHVIFEEF QEELRYSMTS CICKGYREDG PYEVTLVRDS  540
VRDRVFEVRY NSDTNDAQCS CGLHDQNGII CRHVLWILSC HGLKKIPDGL VARRWRKNAL  600
KSLEESVLVG SNEEDGKFVE MSKLWEEFQE TLGVVRGLDG DKIMKLTTLI REFREAHCCA  660
AIVPLSKDAE IEELLGVKSS SAVSILPPKQ SKNKGSGKRM LSNKTKAVEI AKKAKRLCRN  720
CKQMAHHDKR NCPNAFVESR DDVVESVC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-78	FAR1-related sequence 5