PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca13949.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 732aa MW: 83655.7 Da PI: 7.3617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca13949.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.6	2e-13	85	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ GF +rk + k+ r+++ +++ vC++ g+ +k+ e+ r +++ ++gCka++++ +gk+ v+++ +eHnHel Dca13949.1 85 NFYNIYGIGSGFGTRKYTAKHW-RDRSLKSKLIVCNRVGSYYAKKNPskeddsVETIGRITSVLNVGCKARIRLFCL-NGKFTVDEFTEEHNHELL 178 6**************99988.7788*******987776666555555555556788889*****998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-10	85	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-29	300	392	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MDNSNMLQAV IGVDFNGGCR GIVRRLSEDT VVGADYCGGC RDLAVGSLEG VDLNGINEGA 60 LCENVEKDFK PYVGQEFVSV EEAANFYNIY GIGSGFGTRK YTAKHWRDRS LKSKLIVCNR 120 VGSYYAKKNP SKEDDSVETI GRITSVLNVG CKARIRLFCL NGKFTVDEFT EEHNHELLSV 180 QEREFKKLAS NLTDYHKNFI VSNIRLKIGA TKTYRMIKEH VNGFSNVGAT LNQFKNFQRD 240 LKCFIHEKDG QLFVDRFKSM ADNRSGFFFD FDVDADGSLR RAIWADAEAI RNYEVFGDAL 300 SFDPTYSTNK YSMIFTPFTG VDNHKSTITF SGALIANEDY ESFNWVFDRF LKAMGGKEPE 360 YIITDQDPAI IKSVGHIFKR SRHRFCMWHI MNKVPLKFGG ASSDLTEFVR KLNGIVWDAE 420 IGAAEFDCRW LEIINEHGVG KGDWFEECFS IRRQWVMAHC RDLRMGSLLR TTQRSESSNS 480 FFKKFEHKSG TLVEFWLRFE SAIEQQRHNK NILDTKDRHS TPTTMITKSK IEEYGAKVYT 540 HKIFQEFQEE VRCSISNCIV RGYREEDDEQ ITTLKGSADD IVIDVHYNPV FEIGEGVQQL 600 QLSSARNQDG RQSEMTKLWA EIHETVAFVQ RGDLPNVIEL CENLKKFREE HKSCAETVTK 660 DQEFENLLGC KVISEVSILP PKQSKNKGSG KRMLSSKNVA VAVASKQKRM CKNCKQLANH 720 DKRNCPFPFV ED

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MDNSNMLQAV IGVDFNGGCR GIVRRLSEDT VVGADYCGGC RDLAVGSLEG VDLNGINEGA  60
LCENVEKDFK PYVGQEFVSV EEAANFYNIY GIGSGFGTRK YTAKHWRDRS LKSKLIVCNR  120
VGSYYAKKNP SKEDDSVETI GRITSVLNVG CKARIRLFCL NGKFTVDEFT EEHNHELLSV  180
QEREFKKLAS NLTDYHKNFI VSNIRLKIGA TKTYRMIKEH VNGFSNVGAT LNQFKNFQRD  240
LKCFIHEKDG QLFVDRFKSM ADNRSGFFFD FDVDADGSLR RAIWADAEAI RNYEVFGDAL  300
SFDPTYSTNK YSMIFTPFTG VDNHKSTITF SGALIANEDY ESFNWVFDRF LKAMGGKEPE  360
YIITDQDPAI IKSVGHIFKR SRHRFCMWHI MNKVPLKFGG ASSDLTEFVR KLNGIVWDAE  420
IGAAEFDCRW LEIINEHGVG KGDWFEECFS IRRQWVMAHC RDLRMGSLLR TTQRSESSNS  480
FFKKFEHKSG TLVEFWLRFE SAIEQQRHNK NILDTKDRHS TPTTMITKSK IEEYGAKVYT  540
HKIFQEFQEE VRCSISNCIV RGYREEDDEQ ITTLKGSADD IVIDVHYNPV FEIGEGVQQL  600
QLSSARNQDG RQSEMTKLWA EIHETVAFVQ RGDLPNVIEL CENLKKFREE HKSCAETVTK  660
DQEFENLLGC KVISEVSILP PKQSKNKGSG KRMLSSKNVA VAVASKQKRM CKNCKQLANH  720
DKRNCPFPFV ED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-61	FAR1-related sequence 5