PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14026.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 243aa    MW: 27335.7 Da    PI: 5.5853
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14026.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.72.5e-1588183191
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y+++++ +GFs+rk +  +     + +t+r f Cs++g++ + +++     + ++++   tr +Cka ++  +++ g wev +   eHnH+l+p
  Dca14026.1  88 EMYKKHSQVMGFSTRKGTILRVsGVGTPVTQRYFLCSCQGEHGNGSRRglkgVSVQQKNALITRSECKAWIRTLLNEAGFWEVVDHIIEHNHPLTP 183
                 58**************9987763677889*************9999999998788889999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1388183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSNNKTKTID LFEIENVIDL EKDASENVID LEKDAPEEDV FEGGSDDNPV DKERDEVGVD  60
DNLGDMKDFD FSRSLVGVKA KSSEDLYEMY KKHSQVMGFS TRKGTILRVS GVGTPVTQRY  120
FLCSCQGEHG NGSRRGLKGV SVQQKNALIT RSECKAWIRT LLNEAGFWEV VDHIIEHNHP  180
LTPPQWQHHH RLERRISEAE GEVIKAMTET LVAPSVQFRV ASAVACGDTL VGHTKRDHIK  240
LIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-09FAR1-related sequence 5