PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14116.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 262aa    MW: 29436.6 Da    PI: 6.7866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14116.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.86.8e-2159110259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++p      +s+gCp++k+vers++dp+++++tY+ +Hnh+
  Dca14116.1  59 SDSWAWRKYGQKPIKGSPYP------SSKGCPARKQVERSRSDPTMLVVTYSYDHNHP 110
                 69******************......679****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2252112IPR003657WRKY domain
PROSITE profilePS5081124.77653112IPR003657WRKY domain
SuperFamilySSF1182903.27E-1953112IPR003657WRKY domain
SMARTSM007741.8E-2558111IPR003657WRKY domain
PfamPF031064.7E-1660110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEERAISSDN SGDNSPSCTN FPTSTSSPKR RRAIQKKIMN IPIKDLDGSK FKSDCTPPSD  60
SWAWRKYGQK PIKGSPYPSS KGCPARKQVE RSRSDPTMLV VTYSYDHNHP WPTSRNHHHQ  120
SRTTTTTTAA TSTTLVEVKP TSTTKTITLN NNNQITQFPQ NNINGHNNSI ISPSMDHLHQ  180
PLIPPTDELP WVTSDQEILQ NDFIFSNNYN FNDLDMAKFF PMREEDESLF ADLGELPECP  240
VVFHRAAGDE PVNLTPWCGS TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1336113680Disease resistance protein RRS1
5w3x_D1e-1336113680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750470.11e-104probable WRKY transcription factor 65
TrEMBLA0A0K9RVF96e-96A0A0K9RVF9_SPIOL; Uncharacterized protein
STRINGXP_010686240.12e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-44WRKY DNA-binding protein 65