PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14210.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 354aa    MW: 39012.3 Da    PI: 8.0602
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14210.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30190248259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh 
  Dca14210.1 190 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSLEDQSMLVATYEGEHNHA 248
                 8***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-29179248IPR003657WRKY domain
PROSITE profilePS5081125.063184250IPR003657WRKY domain
SuperFamilySSF1182907.85E-25187248IPR003657WRKY domain
SMARTSM007745.1E-35189249IPR003657WRKY domain
PfamPF031062.3E-24190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKMEFSSSWL SSSTSLDHSN NNNNNNNGGG TLCLFDDSPV RDHHKVLEVV QTSSTTEVAT  60
TTPWVTNNNE AGVLLEELNR VNAENKRLTE MLTVVCENYN DLKRQLDVYM SKTTTNEVGN  120
VIKKRKLDNN STIIHNNNIN NTMVKNNNNV DTSSSDEEDS CGKPKEEAIK AKITRVAVRT  180
EASDSNLILK DGYQWRKYGQ KVTRDNPCPR AYFKCSFAPT CPVKKKVQRS LEDQSMLVAT  240
YEGEHNHAPS TQEATSGSSR AVAIGTNPCN TTQNSTGPST VTLDLTKPKP NLGNSETTKM  300
LNSASSQMNK FNTAEFQKLL AEHMASSLSK DPAFTSALAA AISGRFVRQS SRDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19174247171WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691587.11e-130PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLQ76LA91e-116Q76LA9_SPIOL; WRKY transcription factor 1
STRINGXP_010691587.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-77WRKY DNA-binding protein 40