PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14273.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 765aa    MW: 88737.7 Da    PI: 9.047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14273.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-2261148290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 
                 fYn+YA e+GFs+rksk ++   ng++ +r +vCs+eg r ++k++    +++r+e+r++C aklk++ ++  +gk++++k+  eHnH+l+
  Dca14273.1  61 FYNAYALEAGFSIRKSKFHTG--NGKVLDRVLVCSREGIRGNDKRD-GPFKNHRPESRCSCPAKLKINCRQteTGKYRIEKFFAEHNHTLS 148
                 ****************98887..999*****************999.99*******************999889***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1861148IPR004330FAR1 DNA binding domain
PfamPF105511.7E-28270364IPR018289MULE transposase domain
PROSITE profilePS5096610.522547585IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5560587IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-6562582IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDELQESQPR RRLEFQEDDI TVDEDTHIEN LDINVIHAKI SQKCIPEIGM EFDSEEQAYH  60
FYNAYALEAG FSIRKSKFHT GNGKVLDRVL VCSREGIRGN DKRDGPFKNH RPESRCSCPA  120
KLKINCRQTE TGKYRIEKFF AEHNHTLSTP SKTHHFRSHR KISFAQTAEI DMIEGSGIAP  180
KSGFDFMATQ GGGRESVGFT HTDYKNHLRT KRTLAMMSGD TSGVLEYLQQ KQSEDPNFFY  240
AIQVDEDDLI TNIFWADSKM MIDYEDFGDV VCFDTTYRKH KDGRPIALFV GVNHHKQTTI  300
FGAALLYDET AFTFMWLFDT FSKAMNGKLP KTILTDQDAA MASALASQWP QTYHRLCVWH  360
IFQNAAIHLS HVFAKFKDFS RDFSSCVYDY EYEDDFVHAW DEMLKKYDLE SNNWLKRMFN  420
KKEKWALVYG RDTFCADMTT TQRSESMNKV IKHYVSYKHD LRRFFVHFER LLNDRRYDER  480
TADFKADQTN VVLPFPVEIL KHAASVYTPS VFKLFQTELS KSYDCTIDES DIGVVSKYTI  540
FPYKKRYSYN VSYDREKDIV LCSCRKFEFG GILCSHVLKV FSLRGITRIP DKYILARWRK  600
GKRNGSTMTN NQNIADVDPK VIVGRRYRDL CRLATRLSTR AAENEDDYEE VKETLIKLLE  660
KVGLNSNGTD NESRRAQDHN MIADSTGLKK IVRGIKEKPK SVKSSKRPKG ALETTRKARK  720
PRATKDKKMS QVEQITHLSQ ADKFNMFMYT VSGNIKFKRA TKCGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652765.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G9GUX90.0A0A2G9GUX9_9LAMI; Uncharacterized protein
TrEMBLA0A2R6QX940.0A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGXP_008246048.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-128FAR1-related sequence 5