PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca14447.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 324aa MW: 36574.8 Da PI: 8.4762

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca14447.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	36	65	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR RKka++++Le+ Dca14447.1 36 QKTLRRLAQNREAARKSRMRKKAYVQQLEN 65 5888************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-7	29	80	No hit	No description
SMART	SM00338	6.7E-5	33	86	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	35	79	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	37	79	No hit	No description
Pfam	PF00170	1.3E-6	37	65	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	40	55	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	121	195	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVVLLVCSLI LQYRIIQNGA DVVDSTDQSK GKNDDQKTLR RLAQNREAAR KSRMRKKAYV 60 QQLENSRLRL AHMERELEKA RQQGFIVSGS ATDAAHSLGS NGSVAFDTQY GRWLDEHQRL 120 INDTRSALDS HMADDELRSL VDGVMCHYDD LYRIKNMGAK TDIFHMLSGM WKTPAERCFM 180 WLGGYRSSEI LKIVVSHLEP LTEQQLMGIC NLQQSSQQAE DALSQGMEAL QQSLVETLSA 240 TCLGPGSTGM VADYMGQMAI AMGKLGTLEN FVHQADLLRQ QTLQQMHRIL TTRQAARALL 300 VIHDYTTRLR ALSSLWLARP RNFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667846.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	P23923	1e-155	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A0J8B205	0.0	A0A0J8B205_BETVU; Uncharacterized protein
STRING	XP_010667846.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-140	bZIP family protein

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]