PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14717.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 255aa    MW: 28510.1 Da    PI: 6.0433
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14717.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.86.1e-07601004990
        FAR1  49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   ++r+ +++ tgCk  +k k++ d+++++t ++leHnH+l 
  Dca14717.1  60 GGRKRSDKSNVTGCKVAFKAKMQ-DDVFVITGCHLEHNHDLD 100
                 5578899999**********999.9***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTIMATIDDD LFDLNEHYDQ EIEVDINSLG VDVLQNEIEE IVSNPEPLNV GEQAMNVYEG  60
GRKRSDKSNV TGCKVAFKAK MQDDVFVITG CHLEHNHDLD PKNSRFTISG RMNCDYFKKQ  120
ILINDRAGIP IIKKLNVTVI EAGGHENLSF NCRDLWKLVN RERRLDKLHG DAAELERYFV  180
KLKIDNPDFF YAIKKDSDGR LHNVFSADAR CRATFKAFGD IVTFDTTFLC NRHGGGGRHV  240
GLGGAGTAGG SEGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-19FAR1-related sequence 5