PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14842.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 254aa    MW: 28040.9 Da    PI: 6.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14842.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13101153155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +++ h e+Er+RR+++ +  + Lr+ lP       ++K s ++ L  Av+YIk+L+
  Dca14842.1 101 KKMIHREIERQRRQEMSDLCASLRSTLPIeY---IKGKRSTSDHLAGAVNYIKDLE 153
                 5788*************************77...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.51E-1298157No hitNo description
SuperFamilySSF474591.57E-1599172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.176100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10101153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12102174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-5106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MFPNKRTGTI SFQNTNVEGD QNEENNTQVD NIWMETFGVL DEEGAFINSS NYSTTDNTRT  60
SSVDRGRGRG RGRSRGRKSS NVIINSSNPG GSSNIDDEQQ KKMIHREIER QRRQEMSDLC  120
ASLRSTLPIE YIKGKRSTSD HLAGAVNYIK DLEKNVKELG NKRDQLRASI ESTSSKHEGG  180
VGGSSTNYST PYPGTVVMVP RLGGLDIEIN VAYENQGFSL STALHEILGE GLGIASYTST  240
KIDDRMVHNI VCEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16676RGRGRGRSRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-26bHLH family protein