PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca14902.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 394aa    MW: 43041.6 Da    PI: 5.4935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca14902.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11230273755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri +++ +Lr+++Pk      +Kl  a++L  Av+YI +Lq
  Dca14902.1 230 LTERNRRKRISDGMLTLRSIVPKI-----TKLQNAATLSDAVDYIVELQ 273
                 57*********************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-1131150IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.02E-14215284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-10221277No hitNo description
PROSITE profilePS5088813.452223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12225286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9229273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
ESLVAVIIVV VVVAAAVIVV GCGGGGYTPF IEYVGCCCNG VKNQKSGKKR KSVSISACKD  60
ASSVHPAITK SCEALAQLPP YMSLDTSVHG EVVVLSQPRW IHISRTADDS KLSNEEFKGT  120
RVLIPVLGGL VELFSTEHVS EDESIIQYVQ CQCNGSETET LSNSTITSDG PFYPLLEKTL  180
DTLLSSITQF NISPDSTPGS VSQATPFTVK EESEGSQKVT KKHCKSKNLL TERNRRKRIS  240
DGMLTLRSIV PKITKLQNAA TLSDAVDYIV ELQNEQRKLL DELENSDEYS SDFEPTSFKT  300
SNQEHSTFSP TKSSLSQAQV EVNQIGAGNY LLRVESQQSR GVITRLLEAV GSLDVAVVDV  360
NATVCNGRMS SNIIVQTKNE EVQEKDLREH LMRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842759.11e-103transcription factor bHLH90
TrEMBLA0A0K9RVS11e-102A0A0K9RVS1_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-45bHLH family protein