PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca14913.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YA

Protein Properties

Length: 133aa MW: 15242.1 Da PI: 10.6899

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca14913.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.9	4.4e-30	26	83	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rakl+ + k+ + s+ pylheSRh+hAl+R Rg+gGrF Dca14913.1 26 DEPIYVNAKQYHGILRRRQSRAKLDClRLKT-SSSKLPYLHESRHRHALNRVRGTGGRF 83 79*********************945555.89999*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-30	24	86	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.571	25	86	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-25	27	83	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-23	28	50	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-23	60	83	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MMYRIQTQIM GITNARLPLP LDISEDEPIY VNAKQYHGIL RRRQSRAKLD CLRLKTSSSK 60 LPYLHESRHR HALNRVRGTG GRFLSTKKAQ ESNSNMSHDN HSNSNSYPFG HNNVNSTGFE 120 SHQNLVKSGN AFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-20	26	88	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021715040.1	3e-42	nuclear transcription factor Y subunit A-7-like
Refseq	XP_021715041.1	3e-42	nuclear transcription factor Y subunit A-7-like
Swissprot	Q9LVJ7	5e-31	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A0J8DZ11	2e-40	A0A0J8DZ11_BETVU; Uncharacterized protein
STRING	XP_010666451.1	7e-40	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	7e-31	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]