PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15166.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 183aa    MW: 21347.8 Da    PI: 9.3275
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15166.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.74.4e-0944136790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                 A + GF ++k+++ ++ +++ e   + f+Cs++g++++  +  +k +++   ++++C+ +++  +++   d+kw v           +HnHel+
  Dca15166.1  44 AFQNGFALVKATNGQKnRKQPELSASYFRCSRHGRSKTVYDP-DKPKKKPRAQKCDCEFRVRAVQNYhciDNKWAVFWNIvvskrfGNHNHELT 136
                 7789**9999887655388899**************999888.666666667789999988866666699999987432224455589****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-543136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSDADSVDSF EDFRGDDVDY NPLFVTKVCF KDRDEAFDWA NNVAFQNGFA LVKATNGQKN  60
RKQPELSASY FRCSRHGRSK TVYDPDKPKK KPRAQKCDCE FRVRAVQNYH CIDNKWAVFW  120
NIVVSKRFGN HNHELTKYKD GHRHYAGLDE EEKAYIKQQY STSSFPRDIK TGLHQKTPSK  180
PQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692KPKKKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-