PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15219.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 165aa    MW: 19406.6 Da    PI: 6.6379
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15219.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-10911262055
                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Dca15219.1  91 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 126
                 5679*****************************985 PP
2ELK37.55e-134667122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                ELK+qLl+KYsgyL+sLkqE+s
  Dca15219.1 46 ELKNQLLKKYSGYLSSLKQELS 67
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.5E-104667IPR005539ELK domain
PROSITE profilePS5121311.2614666IPR005539ELK domain
SMARTSM011887.9E-74667IPR005539ELK domain
PROSITE profilePS5007112.84366129IPR001356Homeobox domain
SuperFamilySSF466894.28E-2067143IPR009057Homeodomain-like
SMARTSM003895.2E-1368133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-2771132IPR009057Homeodomain-like
CDDcd000861.90E-1275130No hitNo description
PfamPF059203.0E-1786125IPR008422Homeobox KN domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MYHTRESPDN YIHDKTEGVG SSEEDQENSG GDNEVPEFDP RAEDRELKNQ LLKKYSGYLS  60
SLKQELSKKK KKGKLPNDAR QKLLTWWELH YKWPYPSESE KVALAESTGL DQKQINNWFI  120
NQRKRHWKPS EDMQFMVMDG MHPHNAPPFF MDGHYIGDAP YRFGT
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754684.11e-87homeotic protein knotted-1-like
SwissprotO041356e-86KNAP2_MALDO; Homeobox protein knotted-1-like 2
SwissprotQ413303e-86KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A0G3FKK03e-86A0A0G3FKK0_SOLTU; Knox variant X2
TrEMBLA0A0K9QPR32e-87A0A0K9QPR3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010692662.13e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-67KNOTTED-like from Arabidopsis thaliana