PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca15320.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 575aa MW: 65999.3 Da PI: 7.5859

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca15320.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.9	6.5e-24	120	205	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r ++ +++ + k+plW+e ++ m +e g++r+ k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea Dca15320.1 120 RWPRQETLTLLEIRGILDFKFKGAIHKAPLWDELARIMcEEYGYQRNGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 205 8*********************************998999************************98..55667*****85 PP
2	trihelix	54.8	2.4e-17	396	471	1	75
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +W+++ev Li +r me+r+++ g l++ lWe++++km+ g+++s+++Ck+kw+++nk +++ ++k+++++s Dca15320.1 396 QWQEHEVTRLIYVRIGMESRFQQcGFLEQVLWEDIASKMANFGYNKSAIECKKKWDSINKCFQEKGMTNKDHHNNS 471 7*******************9788*****************************************9996554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.249	113	178	IPR017877	Myb-like domain
Pfam	PF13837	5.7E-17	120	206	No hit	No description
CDD	cd12203	4.14E-19	120	185	No hit	No description
Pfam	PF13837	2.1E-12	395	464	No hit	No description
CDD	cd12203	4.48E-16	396	460	No hit	No description
PROSITE profile	PS50090	5.808	397	454	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MEDNHHYDMS DLRHFVSRPR VASFQQQQQQ QQQPFLLSEL MTAHHNHRHH IYNDDSVPVM 60 GRHVGNTTTA ITTAACNNNI GGGGVHQYSG HLLRSDPATT VQLGVDNCGG LDGGDVGTAR 120 WPRQETLTLL EIRGILDFKF KGAIHKAPLW DELARIMCEE YGYQRNGKKC KEKFENLYKY 180 YKKTKEGKAG RQDGKHYRFF RQLEALYGDN HQPPSTSSVG YMTENNIPQF YPEQTFQPQS 240 VDTTHNQQNA FLVRPPRVSD PGSLSNSSNL NTPMTSSSYD GINSGSNESN ESMGARKRKG 300 KKSWKTKTKE FIDFQMKKIE EKQEMWLEKM MKTIDSRENE RMVWKEEWRN QEANRVEKEH 360 KFWANERAWI EARDSVLMST IDKLINNTNN NGGHHQWQEH EVTRLIYVRI GMESRFQQCG 420 FLEQVLWEDI ASKMANFGYN KSAIECKKKW DSINKCFQEK GMTNKDHHNN SNNGVINEGV 480 INYVNHHHHQ SSGGFNNCEM MNEPKLLQLN EISSTSQSSH NSNANVDVNV VVGGGNVMND 540 NSCLRFFLGD NGETSLGWES NYGHKLNKGD NQVLH

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MEDNHHYDMS DLRHFVSRPR VASFQQQQQQ QQQPFLLSEL MTAHHNHRHH IYNDDSVPVM  60
GRHVGNTTTA ITTAACNNNI GGGGVHQYSG HLLRSDPATT VQLGVDNCGG LDGGDVGTAR  120
WPRQETLTLL EIRGILDFKF KGAIHKAPLW DELARIMCEE YGYQRNGKKC KEKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF RQLEALYGDN HQPPSTSSVG YMTENNIPQF YPEQTFQPQS  240
VDTTHNQQNA FLVRPPRVSD PGSLSNSSNL NTPMTSSSYD GINSGSNESN ESMGARKRKG  300
KKSWKTKTKE FIDFQMKKIE EKQEMWLEKM MKTIDSRENE RMVWKEEWRN QEANRVEKEH  360
KFWANERAWI EARDSVLMST IDKLINNTNN NGGHHQWQEH EVTRLIYVRI GMESRFQQCG  420
FLEQVLWEDI ASKMANFGYN KSAIECKKKW DSINKCFQEK GMTNKDHHNN SNNGVINEGV  480
INYVNHHHHQ SSGGFNNCEM MNEPKLLQLN EISSTSQSSH NSNANVDVNV VVGGGNVMND  540
NSCLRFFLGD NGETSLGWES NYGHKLNKGD NQVLH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021743338.1	1e-149	trihelix transcription factor PTL-like
STRING	XP_010683862.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	5e-85	Trihelix family protein