PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15340.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 147aa    MW: 17430.2 Da    PI: 10.4647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15340.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.31.3e-17272132201
        GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                 L++R+ gpp+lRiTgv+ p  g   +++++etg+rLa ++e++gvpfef++ +a+r+++l++e+++++++E 
  Dca15340.1   2 LSKRRVGPPKLRITGVDYPMRGfkPAQKVQETGNRLAGYCERFGVPFEFQA-IAQRWDTLKPEDFKIEKDED 72 
                 899****************99999***************************.7***************9996 PP
2GRAS48.91.2e-1579145308374
        GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r+ ++++W++r +++GF++v+l++++++ a+++++  + + ++ve++++++v+gWk+r L +vS+W+
  Dca15340.1  79 RTLSYKQWQMRHQRVGFTQVALNQEVVQRARAMVKANYHKDFMVEQDKEWMVQGWKGRILSAVSCWK 145
                 556789********************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.8951147IPR005202Transcription factor GRAS
PfamPF035144.5E-15272IPR005202Transcription factor GRAS
PfamPF035144.2E-1379145IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLSKRRVGPP KLRITGVDYP MRGFKPAQKV QETGNRLAGY CERFGVPFEF QAIAQRWDTL  60
KPEDFKIEKD EDYFLKLIRT LSYKQWQMRH QRVGFTQVAL NQEVVQRARA MVKANYHKDF  120
MVEQDKEWMV QGWKGRILSA VSCWKPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720827.14e-33scarecrow-like protein 30
SwissprotQ9XE583e-22SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A151SUR01e-45A0A151SUR0_CAJCA; Scarecrow-like protein 14
TrEMBLA0A151TMC62e-45A0A151TMC6_CAJCA; Scarecrow-like protein 14
TrEMBLM0THP52e-45M0THP5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P15080_0013e-46(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-24SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]