PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca1561.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LSD
Protein Properties Length: 148aa    MW: 15420 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca1561.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.9e-143054125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YP+GA+sV+Ca+C++V
  Dca1561.1 30 CSGCRNLLLYPAGATSVCCAVCNAV 54
               ************************9 PP
2zf-LSD144.13.4e-146993125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C gC+tlL+Y rGA+sV+C++C+t+
  Dca1561.1 69 CAGCHTLLMYIRGATSVQCSCCHTI 93
               ***********************97 PP
3zf-LSD141.81.7e-13107131125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr lL+Y +GA+sV+Ca+C++V
  Dca1561.1 107 CGNCRMLLMYQYGARSVKCAVCNFV 131
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.103.4E-425128No hitNo description
TIGRFAMsTIGR010534.9E-132756IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.37E-530128IPR011031Multihaem cytochrome
PfamPF069436.3E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.9E-146695IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12104134IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPVPLAPYPT PPPPVPFTPP SNGGQSQLVC SGCRNLLLYP AGATSVCCAV CNAVTPVPPP  60
GTEMAQLVCA GCHTLLMYIR GATSVQCSCC HTINLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCNF VTSVVAATSA PEQKFSNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024994470.16e-88protein LOL1
SwissprotQ93ZB12e-78LOL1_ARATH; Protein LOL1
TrEMBLA0A103XQX89e-87A0A103XQX8_CYNCS; Zinc finger, LSD1-type
STRINGVIT_02s0012g00990.t018e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.15e-79lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]