PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca15636.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 961aa    MW: 110355 Da    PI: 8.4479
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca15636.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.5e-2238127190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 kf++ Y+ ++GF+vrk+++++  +n  it++++vCsk+g+r+ +kk+++  +++rae rtgC+ ++   +++ dgk++v+++++eHnH l 
  Dca15636.1  38 KFWEVYGGKMGFDVRKQYNNTD-KNMVITSSRYVCSKQGFRQVDKKRDHLVKNPRAERRTGCNVRMGFVLDRkDGKYKVQDFVSEHNHLLH 127
                 69***************99998.7788********************999****************9888887***************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1738126IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26249343IPR018289MULE transposase domain
PROSITE profilePS509669.903531567IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-6541565IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-4542569IPR006564Zinc finger, PMZ-type
SuperFamilySSF479542.07E-11748804IPR013763Cyclin-like
PfamPF001342.3E-9748804IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.102.2E-9748798IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.102.0E-8799910IPR013763Cyclin-like
SMARTSM013321.7E-4807945IPR004367Cyclin, C-terminal domain
PfamPF029841.7E-6807910IPR004367Cyclin, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MESIVDANVE TSNTHTQLNE NWVPYIGMEF DTAEEAWKFW EVYGGKMGFD VRKQYNNTDK  60
NMVITSSRYV CSKQGFRQVD KKRDHLVKNP RAERRTGCNV RMGFVLDRKD GKYKVQDFVS  120
EHNHLLHSPE TIHLMPTHRK ITEVQALAIE LADASGIKPK AAHELHSAQV GGSSNLSYTH  180
RDHKNYLRSK RQKDLMYGDA GNLLKYFHQR SVENPSFQYS IQLDSNEQIT NIFWADAKML  240
IDYVLFGDVF AFDTTFGTNN ENRPLGVFVG FNHFREIVVF GAALLYDETA ESFKWLFEVF  300
LATHDNKMPK TIFTDQDLAM GKAIAEVMPN TWHGLCTWHI MQNAMKHLLH DGANALRIFR  360
ACMYEYSDEL SFEEAFVTLR STVTKSAWLD GIYSLKKKWA ECYMSDVFSL GMRSTQLSES  420
FNKDLKDYLH CNLDIMRFFK QFERVIKQKR ENEIISEYES REKLPRIKLR RSPLLRQAGH  480
LYTPKVFEAF QDEYEWSTAA YIKPCSEGLL AGEYIVGISD YENGNKASIE YRVFGDSSSQ  540
TVSCNCKMFE RLGILCAHAL KVLDAMNIKL IPEKYILKRW TKEARSGNIQ NAGKTILEDT  600
QLDATQRYRD LCRKFVKIAS RAANFKESSL LLDRGLDNMV TEVEKILTSM KPASASGCLD  660
LNATPEQMCV PSSLNQITLK KKVKTTGGRR KKSWIEKFHK DRVQNNTNKK CRAKKQKNQH  720
NIEGNIEHTQ EQVEVANNNP SIFLEEGKLW AIRLLSVACL SLAAKMEECK VASLSEYPIS  780
ELGFDCNAVK RMELLVLSTF NWKMSLVTPF AYLHFFVKKL CDDQMTIHHH LDHFLSKAVE  840
LVMASIQEMR RLIEYRPSVI AATAVLAAFD AQMTRETLMD KVTSVSLWET SGNRQREQFL  900
SCYSLMQRLT LKGNISTPGV IEVDHTLDKV PSNVGTKRSL TFSDSDQGPS NRTKFSRDQS  960
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1679691KKKVKTTGGRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684684.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9G6I40.0B9G6I4_ORYSJ; Uncharacterized protein
STRINGXP_010684684.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5