PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca15772.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 232aa MW: 25469.1 Da PI: 6.6902

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca15772.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasn+ kll +lp ++r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk Dca15772.1 7 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKVFGASNIAKLLGHLPVSDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLATLK 105 7***********************89*******************************************************************99 PP DUF260 99 ee 100 ++ Dca15772.1 106 QQ 107 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.196	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAGSGSPCGA CKFLRRKCIR GCVFAPYFCH EQGATHFAAI HKVFGASNIA KLLGHLPVSD 60 RSEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVSLQAQ LATLKQQAIA QNLINGNNST 120 SNPSERYYEK GASSTTNYPQ DVQSWLQSEY PHMVPPFDSN LNCSAESSTI YGDQGGFMNH 180 HINHNSFAHD HSNNDQDVSL ASYEGSSSHQ SKWCFNETDD LHSVAFGYAQ RS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-36	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-36	3	101	7	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770209.1	1e-116	LOB domain-containing protein 29-like
Swissprot	Q9M2J7	3e-65	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A251JLS2	6e-91	A0A251JLS2_MANES; Uncharacterized protein
STRING	XP_010679217.1	1e-111	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-53	LBD family protein

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]