PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca1591.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 662aa MW: 74958.9 Da PI: 6.6584

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca1591.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.4	5.8e-19	84	181	2	91
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y +++k+vGFs r+s++++ r g +t+++fvCs+egk+++ +k +++++r +tr++Cka +kvkk+kdg+++vt+ HnH+l+p Dca1591.1 84 LYLQHSKSVGFSARISTTRTIgGRGGIVTEKNFVCSCEGKTNSGTKVlnsstddRKRKQRIVLHTRVHCKAAMKVKKDKDGNFVVTQHIVAHNHPLTP 181 7999***********9998789999***********99888999985444455555689****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-16	84	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-33	302	397	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MDEDGSVTAN MVDDNEHEQP LTNLEIVTPI ERDDHELPMG DGDDTVEEGD DNVEEDDGLI 60 DEVVDISSSL LGIKAKTWKG LHKLYLQHSK SVGFSARIST TRTIGGRGGI VTEKNFVCSC 120 EGKTNSGTKV LNSSTDDRKR KQRIVLHTRV HCKAAMKVKK DKDGNFVVTQ HIVAHNHPLT 180 PPEWQHHHRS ERQIPPEEGD VIQMMTEARL PTCAQFRYLA TCCGGEEFVG HTKKDHYNFV 240 GRLKMKMLAG GDAQTVIDML QKRATEEPSF YYKVKLDAEN RVQNIFWRDG MMKEDYLLYH 300 DVVIFDTTYR TNKYNLICAP FVGVNNHWAN VMFGCAFLSD EKTESFEWLF NTFNESMGGN 360 VYPTSIFTDQ DQAMSSAIEK VFQSSRHRLC QWHIQQNAMS HFGSLKHDST FQNVFNKCLR 420 GCSDEVEFEQ TWSNMIRDYG LEGNAWFDRL YGIRMKWSTA FSKDFFSAGI LSSQRSESTN 480 HAIGFQANKT TSLTDFYGIF TDTVKRWRSE EQKNEFQCSR SMPSSTMSAV GLIKSAASVY 540 TVTLFQRFEQ EFVSSLGTNA FLMGTEDSTK CQGSKEGQDF MDQIYSNAAS GVHSLFADVT 600 SSQAYQSSDS NLSQVLDPVR AITKGRNART QRQPKPKKSS NKRQKSSAQT NVVSFTPLPR 660 LI

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MDEDGSVTAN MVDDNEHEQP LTNLEIVTPI ERDDHELPMG DGDDTVEEGD DNVEEDDGLI  60
DEVVDISSSL LGIKAKTWKG LHKLYLQHSK SVGFSARIST TRTIGGRGGI VTEKNFVCSC  120
EGKTNSGTKV LNSSTDDRKR KQRIVLHTRV HCKAAMKVKK DKDGNFVVTQ HIVAHNHPLT  180
PPEWQHHHRS ERQIPPEEGD VIQMMTEARL PTCAQFRYLA TCCGGEEFVG HTKKDHYNFV  240
GRLKMKMLAG GDAQTVIDML QKRATEEPSF YYKVKLDAEN RVQNIFWRDG MMKEDYLLYH  300
DVVIFDTTYR TNKYNLICAP FVGVNNHWAN VMFGCAFLSD EKTESFEWLF NTFNESMGGN  360
VYPTSIFTDQ DQAMSSAIEK VFQSSRHRLC QWHIQQNAMS HFGSLKHDST FQNVFNKCLR  420
GCSDEVEFEQ TWSNMIRDYG LEGNAWFDRL YGIRMKWSTA FSKDFFSAGI LSSQRSESTN  480
HAIGFQANKT TSLTDFYGIF TDTVKRWRSE EQKNEFQCSR SMPSSTMSAV GLIKSAASVY  540
TVTLFQRFEQ EFVSSLGTNA FLMGTEDSTK CQGSKEGQDF MDQIYSNAAS GVHSLFADVT  600
SSQAYQSSDS NLSQVLDPVR AITKGRNART QRQPKPKKSS NKRQKSSAQT NVVSFTPLPR  660
LI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740411.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_021853266.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010665808.1	0.0	(Beta vulgaris)
STRING	XP_010681849.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-77	FAR1-related sequence 5