PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca16049.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CO-like

Protein Properties

Length: 354aa MW: 39051.1 Da PI: 4.6899

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca16049.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.3e-07	2	35	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 ++ C+ ++++ + l+Ce ++ +lC C e H+ Dca16049.1 2 NPECNYCSQNAAVLYCEADSAHLCLLCDREVHSA 35 689*****************************54 PP
2	CCT	60.9	4.2e-21	303	346	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRY+eK+k+R+++K+irYesRK++A+ R+RvKGrFvk++ Dca16049.1 303 RGKAMLRYQEKKKNRRYDKHIRYESRKVRADIRQRVKGRFVKAS 346 7789**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.6E-6	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.2E-6	2	42	IPR000315	B-box-type zinc finger
CDD	cd00021	6.21E-8	5	45	No hit	No description
PROSITE profile	PS50119	9.044	5	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.267	303	345	IPR010402	CCT domain
Pfam	PF06203	2.5E-15	303	345	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNPECNYCSQ NAAVLYCEAD SAHLCLLCDR EVHSANSLSL KHSRFIRFGS DPGSEPGPTV 60 DGCPPASELA RLCGIDLAGG SGSGSDLVVP TLGDDVGRDA VYEQLVRLGL NEREREKESG 120 SEFGPGTPSL DAGYGSDILM STNNNNNKKT FTSLLMMEGG GGGGGGEGSF SKEEGEVLWE 180 YDPAYQTQAI QAWDSHWGRS LEMDTEETSC TSSMVPEDVC EMQCSEILKG SQSRKDNRNQ 240 QALSDQFFVT VDNCSRPSVG GSSEEITIKP ETHEGEADFQ ALEWPYWRKP LSQTDMDQLA 300 ENRGKAMLRY QEKKKNRRYD KHIRYESRKV RADIRQRVKG RFVKASNAAD VDHS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNPECNYCSQ NAAVLYCEAD SAHLCLLCDR EVHSANSLSL KHSRFIRFGS DPGSEPGPTV  60
DGCPPASELA RLCGIDLAGG SGSGSDLVVP TLGDDVGRDA VYEQLVRLGL NEREREKESG  120
SEFGPGTPSL DAGYGSDILM STNNNNNKKT FTSLLMMEGG GGGGGGEGSF SKEEGEVLWE  180
YDPAYQTQAI QAWDSHWGRS LEMDTEETSC TSSMVPEDVC EMQCSEILKG SQSRKDNRNQ  240
QALSDQFFVT VDNCSRPSVG GSSEEITIKP ETHEGEADFQ ALEWPYWRKP LSQTDMDQLA  300
ENRGKAMLRY QEKKKNRRYD KHIRYESRKV RADIRQRVKG RFVKASNAAD VDHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682991.1	1e-132	PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2
TrEMBL	B3TZZ9	1e-130	B3TZZ9_BETVU; COL3
STRING	XP_010682992.1	1e-132	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	6e-20	B-box type zinc finger protein with CCT domain