PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16050.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 200aa    MW: 22930.6 Da    PI: 9.9742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16050.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-103771797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                ++  +f+++++g+   +  ++l+d++gr W  +l    +s++  +t+GW + +++ +Lk g+fv ++++++s+f  +v++f
  Dca16050.1  3 RITPSFVKNFDGQ--IPHLVSLTDSTGRIWPAEL--GIRSQELHITEGWHQCARDLELKCGEFVELRYVQNSTF--LVTAF 77
                5778999888777..6668***************..*********************************99998..77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.842180IPR003340B3 DNA binding domain
PfamPF023623.4E-8376IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-13382IPR015300DNA-binding pseudobarrel domain
CDDcd100179.79E-8377No hitNo description
SuperFamilySSF1019363.14E-14484IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKRITPSFVK NFDGQIPHLV SLTDSTGRIW PAELGIRSQE LHITEGWHQC ARDLELKCGE  60
FVELRYVQNS TFLVTAFGID GCQKKESGER IQKNRGDGFV GIRFQKIFKA KFKNFVSIPK  120
KVLLKCNFSL DQRVTVRSNE GHFAISQLRV TRDRFVLGYT GLMKLWERMG VLKGDKLEFE  180
VICENGNKIK EIVVSNLSQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-10B3 family protein