PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16051.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 203aa    MW: 22989.8 Da    PI: 9.7302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16051.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-123771797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                ++p  f+++++g    +  ++l+d++gr+W  kl     s +  +t+GW++  ++ +Lk+g+fvv++++++s+f  +v+++
  Dca16051.1  3 RIPHAFIKNFDGR--IPNLVSLTDSTGRVWPAKL--GLLSHELHITEGWQQCTEDLELKSGEFVVLRYVQNSTF--LVTAC 77
                69*****888766..6678***************..88888899*************************99999..88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.758180IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-13384IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-9377IPR003340B3 DNA binding domain
CDDcd100177.45E-7377No hitNo description
Gene3DG3DSA:2.40.330.101.6E-12380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-699189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-4102184IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKRIPHAFIK NFDGRIPNLV SLTDSTGRVW PAKLGLLSHE LHITEGWQQC TEDLELKSGE  60
FVVLRYVQNS TFLVTACGID GCQKKEYGVG HPTNLTTPDL KIRFKKVFSG DFKNFVTIPK  120
KVLLKCIFSL DQRVTVRSIE GHFTTSQLRI TSDKFVLGYT GLLKLWERMG VLKGDKLQFE  180
VICENGNKIK EIVVTNLSQC GRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-10B3 family protein