PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16095.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 624aa    MW: 69148.9 Da    PI: 8.3736
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16095.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22136237199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d+++++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l+
  Dca16095.1 136 FCKALTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHNNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKHHLL 231
                 99*****************************9545444.38************************************************..56888899 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  Dca16095.1 232 LGIRRA 237
                 999997 PP
2Auxin_resp115.16.1e-38262344183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka + ++vs+GmRf+m+fete+s +rr++Gt++g+sdldp rW+nS+Wr+L+
  Dca16095.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKANYgQQVSLGMRFRMMFETEESGTRRYMGTISGISDLDP-RWKNSQWRNLQ 344
                 79********************************999***********************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-42128265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-41129250IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-19135236No hitNo description
PROSITE profilePS5086311.857136238IPR003340B3 DNA binding domain
PfamPF023622.1E-20136237IPR003340B3 DNA binding domain
SMARTSM010192.6E-22136238IPR003340B3 DNA binding domain
PfamPF065072.3E-32262344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MKPAPVTSSG GAPPCSGGNT SQGEKKSIIN QELWQACAGP LVNLPVAGTH VVYFPQGHSE  60
QVAASMKMNV DAQIPNYPNL PSKLLCLLHS VTLHADPETD EVYAQMTLQP VPSFDKEALV  120
RSDISLRGHK PQTEFFCKAL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD  180
LHNNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKHHL LLGIRRANRQ  240
PTNLSSSVLS TDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKANYGQQ  300
VSLGMRFRMM FETEESGTRR YMGTISGISD LDPRWKNSQW RNLQVDWDES TGGDRRTRVS  360
AWEIEPVMAP FFMCPPPFLG AKRPRLPGMP DDDGDFDSLF KRTMPWLGDD PHSSTGLSLA  420
QWMNMQQNNS MHSNFLNTSP ASALQCLPAA DLSRQLGFSA LQTPQQSNLL YSTPGSVTSV  480
QQLGQAQNLS GGLSPLSSLV QSQQQLPDVS QHGRQTLMNP TITVSQVQSQ LLQAQAQAQA  540
QAQVQTQNFN SVQQPSSAQN HQLSQILPQQ QILAQNQQQN LLTDSQLQMQ LIQRLQQQQS  600
LFSQSSAPQQ VSNQYNQLQD QQRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1752336545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715877.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S0970.0A0A0K9S097_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19