PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16138.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 327aa    MW: 36201.7 Da    PI: 6.7673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16138.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-144392255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L +++eY++ Lq
  Dca16138.1 43 RSKHSVTEQRRRSKINERFQMLRDLMPHG----DQKRDTASFLLEVIEYVQLLQ 92
                899*************************7....79****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-2141113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1841112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5354191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-134396No hitNo description
PfamPF000101.5E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-104797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKSSKSHTTQ EDDDEYDDDF ASKKEGSSNI KDVKNNDKVS AIRSKHSVTE QRRRSKINER  60
FQMLRDLMPH GDQKRDTASF LLEVIEYVQL LQEKVQKYEG PYQQLGTEPS KLVPWRHSQW  120
RVQSYLGHPQ SVKNGFGSGS VSTLVGKTDD RSFSSNASLI SHLQTPSEMD SGHDNHRNLD  180
QHPDVGDKAA SVPTSFHMHA ASIGRSDGDD SCLSHRDASS IPRGIQSDDQ PGDHVIEGGT  240
ISISSAYSHG LLMTLTQALQ NSGVDLTEAS ISIRIDLGKR ASPNLLSSLS SNSKEHEFQV  300
SQDTKIRHAS DGNSRDGLDQ PHKKLKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021756146.11e-135transcription factor BIM2-like
SwissprotQ9CAA41e-81BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0K9RDJ71e-126A0A0K9RDJ7_SPIOL; Uncharacterized protein
STRINGXP_010681151.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-80BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]