PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16243.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 448aa    MW: 49481.6 Da    PI: 6.1909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16243.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12239280854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  E++RR++ N++++ L++l+P++     +K + a+i+  A+ YI++L
  Dca16243.1 239 TEKQRRQNFNTKYDLLKKLIPTP-----TKADRASIVHDAIAYINEL 280
                 7**********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.192231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-10237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-12238296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-11238290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9239280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-10240285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MALDFQNPSN EYNDWTVTNN NNNNNRDTVS HEMGYTQFDE TTLHQTTATT DLLTLLHLPR  60
CTFASSSTSS PPPPPPPGLA AFLGEMKPSI HMNMMHHEGI PPPPPPPPGS YDPLFHLNLP  120
PQPSPLLRDL MFHGYPANSG VPLRGGGGTN NNNCPSSLFA QMDDPESGGT NMNPMSMNMN  180
MNMNFNGIPG LYVENGGDQQ QQQQHMMMMS SENGVFEFTS GASLDNDGNL VKSPKGFVTE  240
KQRRQNFNTK YDLLKKLIPT PTKADRASIV HDAIAYINEL KRTVSDLKLL VQKKRISNDR  300
VKRLKTEENN PSDDPENKSS HGPDGPVGVV KPDPDDALVG QLRSSWLQRK CKDTEIDVRI  360
VDDEVTIKLV QRKKMNCLLS VSRTLDDLQL DLRHVAGGHV GDYYSYLFNS KICEGSSVYA  420
SAIANKLIDV VERQYAAASV AVAPTTSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759977.11e-120transcription factor bHLH91-like
RefseqXP_021759978.11e-120transcription factor bHLH91-like
TrEMBLA0A0K9R3E51e-111A0A0K9R3E5_SPIOL; Uncharacterized protein
STRINGXP_010691929.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-65bHLH family protein