PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca1631.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 905aa MW: 98078.1 Da PI: 8.0546

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca1631.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.6e-05	746	768	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg +F+ +++L rH H Dca1631.1 746 YSCAVCGLRFKLQETLARHSEWH 768 99*****************7665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	35.835	61	189	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	2.0E-42	63	183	IPR008942	ENTH/VHS
SuperFamily	SSF48464	7.72E-38	63	183	IPR008942	ENTH/VHS
SMART	SM00582	2.5E-40	64	186	IPR006569	CID domain
CDD	cd03562	4.31E-39	66	174	No hit	No description
Pfam	PF04818	2.2E-9	117	170	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	10.014	746	773	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	748	768	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MESSRRPPFD RSRELNSLKK PRFSGEDPRR PSPATAGNAP AIAPRAASGR LQNNALQQLK 60 QFQELVNQYK TALAELTFNS KPIITNLTII AGENHQAARA ISATICDHIL EVPSDQKLPS 120 LYLLDSIVKN IGRDYVKYFA TRLPEVFCLA YKQVDPSIHT GMRHLFGTWK GVFPLQQLQY 180 IESELGFGTA VNGSSSASAT LKNDTQTQRQ SQSIHVNPKY LQARQRLQQS SPPKVMDING 240 IDVGSSEDLE RPNRSSLLKP RGTAYGGYDF ASGVKRPLST LAGKSLGQGN EKRWLGASGD 300 VDESISTLRN GYDIKHGISN YTGARATTPN VPLLQNPPRS SMEVSKSWKN SEEEEYKWDD 360 LGNRATDPSV LDKLELGTRS AKWQNQTEAR SSIEGRRTMM GSSNVGVPAT AASGAKSLVG 420 QHNPTGQPVG PQRPLVSKRD PRQSLMKKSQ TSVRTDPREA SVSGQPKTGL RDLPSRPQNS 480 QPGNLPKMQS QTPQKLPSAS EQSQYVPSSQ QLPNSEANLS RIIQKAQQSQ SSSSPMNVAS 540 PGSSDSLLGN SHEQLNVSNL LAAVMKSGLL TSASTAGKLG TQFLATTSTI SESQGIVEKP 600 LLPPGLSNSL PAVMSTSIQI SEKASGDSNP LSILSTLISN GLISAPKTEE TAPTPTLCEN 660 KLLEQSPTDA TVTSATIPSV LISPVGLPML TNVETSSSKP IGKAPSVLAT SAKVDDGNLI 720 GFEFKPPVLR EFHSAVIDRL SEDLPYSCAV CGLRFKLQET LARHSEWHAL KNSPENCLNP 780 PSRRWYSSTT DWMAGSPGYP FGYSSVAPAV ESSTGAEHNE KMVPADESQC LCLLCGELFE 840 DFYSEEWGEW MFKGAVYTPS MSETTETGPS YENNMHNMIV HSNCMSEDSV RELGLLCGIK 900 VERST

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MESSRRPPFD RSRELNSLKK PRFSGEDPRR PSPATAGNAP AIAPRAASGR LQNNALQQLK  60
QFQELVNQYK TALAELTFNS KPIITNLTII AGENHQAARA ISATICDHIL EVPSDQKLPS  120
LYLLDSIVKN IGRDYVKYFA TRLPEVFCLA YKQVDPSIHT GMRHLFGTWK GVFPLQQLQY  180
IESELGFGTA VNGSSSASAT LKNDTQTQRQ SQSIHVNPKY LQARQRLQQS SPPKVMDING  240
IDVGSSEDLE RPNRSSLLKP RGTAYGGYDF ASGVKRPLST LAGKSLGQGN EKRWLGASGD  300
VDESISTLRN GYDIKHGISN YTGARATTPN VPLLQNPPRS SMEVSKSWKN SEEEEYKWDD  360
LGNRATDPSV LDKLELGTRS AKWQNQTEAR SSIEGRRTMM GSSNVGVPAT AASGAKSLVG  420
QHNPTGQPVG PQRPLVSKRD PRQSLMKKSQ TSVRTDPREA SVSGQPKTGL RDLPSRPQNS  480
QPGNLPKMQS QTPQKLPSAS EQSQYVPSSQ QLPNSEANLS RIIQKAQQSQ SSSSPMNVAS  540
PGSSDSLLGN SHEQLNVSNL LAAVMKSGLL TSASTAGKLG TQFLATTSTI SESQGIVEKP  600
LLPPGLSNSL PAVMSTSIQI SEKASGDSNP LSILSTLISN GLISAPKTEE TAPTPTLCEN  660
KLLEQSPTDA TVTSATIPSV LISPVGLPML TNVETSSSKP IGKAPSVLAT SAKVDDGNLI  720
GFEFKPPVLR EFHSAVIDRL SEDLPYSCAV CGLRFKLQET LARHSEWHAL KNSPENCLNP  780
PSRRWYSSTT DWMAGSPGYP FGYSSVAPAV ESSTGAEHNE KMVPADESQC LCLLCGELFE  840
DFYSEEWGEW MFKGAVYTPS MSETTETGPS YENNMHNMIV HSNCMSEDSV RELGLLCGIK  900
VERST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	1e-14	65	169	8	112	PCF11 protein
1sz9_B	1e-14	65	169	8	112	PCF11 protein
1sz9_C	1e-14	65	169	8	112	PCF11 protein
1sza_A	1e-14	65	169	8	112	PCF11 protein
1sza_B	1e-14	65	169	8	112	PCF11 protein
1sza_C	1e-14	65	169	8	112	PCF11 protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835206.1	0.0	polyadenylation and cleavage factor homolog 4 isoform X2
TrEMBL	A0A0K9R4K2	0.0	A0A0K9R4K2_SPIOL; Uncharacterized protein
STRING	XP_010683870.1	0.0	(Beta vulgaris)