PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16524.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 244aa    MW: 27646.7 Da    PI: 10.0942
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16524.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.2e-12111151549
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                 GVr+ + +g+W+A+I dp+      +r+++g++ t eeA +a+++ 
  Dca16524.1 111 GVRRLP-SGKWAARIGDPV----AqTRIWVGTYNTVEEAFRAYCKK 151
                 9**999.7*********73....45******************986 PP
2AP238.43.2e-12168208549
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                 GVr+ + +g+W+A+I dp+      +r+++g++ t eeA +a+++ 
  Dca16524.1 168 GVRRLP-SGKWAARIGDPV----AqTRIWVGTYNTVEEAFRAYCKK 208
                 9**999.7*********73....45******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.709108166IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-11110153IPR016177DNA-binding domain
PfamPF008471.3E-7111150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-12111155IPR001471AP2/ERF domain
CDDcd000186.35E-13111148No hitNo description
SMARTSM003809.4E-4111166IPR001471AP2/ERF domain
PROSITE profilePS5103212.787165222IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-11167212IPR016177DNA-binding domain
PfamPF008471.3E-7168207IPR001471AP2/ERF domain
CDDcd000186.35E-13168205No hitNo description
Gene3DG3DSA:3.30.730.102.3E-12168222IPR001471AP2/ERF domain
SMARTSM003803.4E-4168228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAVSTDLGW REAVAAAKEG GRRWRRRRGY TTPEEAALVV QRKRLEFQAM YGIVVSDDKR  60
TEFWDSQETK TEIARKLLGT YNTVEEAVSA YYKKKDLLDA KMTATVNLPC GVRRLPSGKW  120
AARIGDPVAQ TRIWVGTYNT VEEAFRAYCK KKDLLDAKMT ATVNLPCGVR RLPSGKWAAR  180
IGDPVAQTRI WVGTYNTVEE AFRAYCKKKD LLDAKMSRTV FDDASKFRCN DSPDCKTTKP  240
LQLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-11ERF family protein