PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca1665.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 279aa    MW: 31759.8 Da    PI: 9.1352
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca1665.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.52.5e-09135227790
       FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                A e GF ++k+++ ++ +++ e   + f+Cs++g++++  +  +k +++  +++++C+ +++  +++   d+kw+v           +HnHel+
  Dca1665.1 135 AFENGFALVKATNGQKnRKQPELSASYFRCSRHGRSKSVYDP-DKPKKKPRTQKCDCEFRVRAVQNYhsiDNKWVVLWNIviskgfGNHNHELT 227
                7789**9999887655388899**************999888.677777778889999988866665689999988643335666699****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-6134227IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGLPVGGRLK SIGLPEVGAG SSEFGVGLPE VAFGRRIRCW AAGGRCLVAG SSLGFAQNFV  60
YPWMDNPEFF LPVDGRPELS HLWLWTKHFI VLPWEDSPDS FEDFRGDDVD YNPLFVTKVC  120
FKDRDEAFDW ANNVAFENGF ALVKATNGQK NRKQPELSAS YFRCSRHGRS KSVYDPDKPK  180
KKPRTQKCDC EFRVRAVQNY HSIDNKWVVL WNIVISKGFG NHNHELTKYK DGHRHYAGLD  240
EEEKAYIKQQ YSSSAFPRDI KTGLHQKTPS KPQPSSKPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183KPKKKPR
2178184PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-