PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16674.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 378aa    MW: 41417.9 Da    PI: 7.9764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16674.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019153175123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ C k Fs+k+ L  H+r+H
  Dca16674.1 153 FKCKLCIKGFSSKMALYGHMRNH 175
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.9E-688112No hitNo description
SMARTSM003551.390112IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-890112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6490117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576673.9E-6148175No hitNo description
SMARTSM003550.0082153175IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4153180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305153175IPR007087Zinc finger, C2H2
PfamPF139123.0E-4153177IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MENSSIIEKI KQDKSTHNLI IKLKLPNKFK QNHLNYDDSL IINSPSINQV QEEDEEDINP  60
PPTKQPPKQP LSAAMEVVAE GGVDEVLKLH ICPSCNKGFK SGKALGGHSR AHIQQHHHQQ  120
LQQTTTHDGS SAAAEGNNNN NNNNNNNNNN GIFKCKLCIK GFSSKMALYG HMRNHPERPY  180
RGMNQPPHTV DRKTLEVRLR RLGNWRVTGK RGRKGGLIST TATNNTNSTL LFSPVNTTSS  240
FATLDANDEA AAAADTLLFL AGGGYGSDDE LGGDVELKKE RYFLRFNRSS HNEDRYNIPI  300
DNDNGVGGCG GGQPNEVVVV NASNSNDDAE GRASFGLDRK IIGLDRSSRS GPNLDRNLVG  360
QVLDPLFSSG PVFIRSEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-10C2H2 family protein