PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16797.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 353aa    MW: 38417.9 Da    PI: 10.287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16797.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31287344359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ e+p+++++tYeg+Hnh+
  Dca16797.1 287 DDYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCLEEPSMLIVTYEGDHNHH 344
                 99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17237283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.9E-33273345IPR003657WRKY domain
PROSITE profilePS5081129.7280343IPR003657WRKY domain
SuperFamilySSF1182901.1E-26283345IPR003657WRKY domain
SMARTSM007742.0E-36285345IPR003657WRKY domain
PfamPF031063.0E-26287344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGEIEEVNKA AVDNCHRVLS IIAQPHENHT KFRVLAAETE QTLIKFRKVV SILGKQVGHA  60
RARLVKPNRA MSLIQNGCVK TENVAKIEQN HAVVVGGGVG KGFQLFKGDL NEGSTSGKSC  120
LSLGNDLSLA LVGPSSNEAA VPLRAVGPSS NEHYRFVELQ QHMKRRQAEM LYRRSNSSGG  180
GMSLKFDSAS YTPTLSSARS FVSSLSVDGS MGGLEGNGFG LIGVSRGSDP NLLSQFKKRC  240
YGARSEDGSV KCGGPGKCHC SKKRKHRVKR TIKVPAISNK LADIPPDDYS WRKYGQKPIK  300
GSPHPRGYYK CSTVRGCPAR KHVERCLEEP SMLIVTYEGD HNHHQVPVRS ANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19278347775WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679182.11e-140PREDICTED: probable WRKY transcription factor 21
TrEMBLA0A0K9S1G11e-127A0A0K9S1G1_SPIOL; Uncharacterized protein
STRINGXP_010679182.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-69WRKY DNA-binding protein 74