PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca16932.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 311aa    MW: 34433.4 Da    PI: 8.5651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca16932.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30148206259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh 
  Dca16932.1 148 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSLEDQSILVATYEGEHNHA 206
                 8***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29138208IPR003657WRKY domain
PROSITE profilePS5081126.555142208IPR003657WRKY domain
SuperFamilySSF1182903.66E-25144208IPR003657WRKY domain
SMARTSM007741.4E-34147207IPR003657WRKY domain
PfamPF031062.4E-24148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MECSSWLSGS CGTLDRGRRI DTLSLFDDSP VREVDTGTQV KKEARVLLEE LNKINEENAR  60
LTKMLTVVCE NYNELKRQWT DYMSKNGDNI VNKKRKVDNV NDNRSSNNNN NNNINFASSS  120
SEGEEVDRAK ITRVAVRTEI SDSSLILKDG YQWRKYGQKV TRDNPCPRAY FKCSFAPSCP  180
VKKKVQRSLE DQSILVATYE GEHNHASPIQ QVTANSSSIP ILTSGSIPSN VTLSSSASPI  240
VTLDLTEPKS IVNESTKTSA STRSQLNNIN SGDFQKLLSQ HMASSLSKDS SFTSALVAAI  300
SGQFVPQSSY R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201462081374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691587.11e-104PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLQ76LA96e-93Q76LA9_SPIOL; WRKY transcription factor 1
STRINGXP_010691587.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-61WRKY DNA-binding protein 40