PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca17249.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GATA

Protein Properties

Length: 363aa MW: 40381.7 Da PI: 6.4028

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca17249.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.1	1e-17	238	272	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Dca17249.1 238 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 272 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.6E-79	7	329	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.569	232	268	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.8E-18	232	282	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.42E-15	236	296	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.2E-14	236	270	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.80E-14	237	284	No hit	No description
PROSITE pattern	PS00344	0	238	263	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	238	272	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MGSEFGCVPE RRVSDDKFIV EDLLDFSNDD DVVAHDDDLT AFDNETRHNS NNNSSDTSAV 60 VTPPDSGNSS FSGNVDVFPS AGDSQFSGEL CVPCDDLAEL EWFSNFMEES FSSEDLQKFN 120 MISGMSSAMK ARPDNTTLSE TRYYDLEPSR PDFIPNPTFG PEMPVPGKAR SKRSRAAPCN 180 WTSRLIVVSD GSPVPTQPGP EPKPVKSAPK KKSGSGAGTV SLARSSSGPG SDGEVRRCLH 240 CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVMELR 300 RQKDMMRQQL HIHEQQHYHH QQQQQLIHHN NHHPSNNNMI FDPANSDDYL IHQHIGPDYR 360 QLI

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MGSEFGCVPE RRVSDDKFIV EDLLDFSNDD DVVAHDDDLT AFDNETRHNS NNNSSDTSAV  60
VTPPDSGNSS FSGNVDVFPS AGDSQFSGEL CVPCDDLAEL EWFSNFMEES FSSEDLQKFN  120
MISGMSSAMK ARPDNTTLSE TRYYDLEPSR PDFIPNPTFG PEMPVPGKAR SKRSRAAPCN  180
WTSRLIVVSD GSPVPTQPGP EPKPVKSAPK KKSGSGAGTV SLARSSSGPG SDGEVRRCLH  240
CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVMELR  300
RQKDMMRQQL HIHEQQHYHH QQQQQLIHHN NHHPSNNNMI FDPANSDDYL IHQHIGPDYR  360
QLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021739141.1	1e-139	GATA transcription factor 12-like
Swissprot	P69781	1e-84	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A0K9QTY1	1e-130	A0A0K9QTY1_SPIOL; GATA transcription factor
STRING	XP_010668515.1	1e-133	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	6e-70	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]