PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17527.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 245aa    MW: 28611.8 Da    PI: 8.4168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17527.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-11281081498
                 T-EE--HHH.HTT...---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  14 grlvlpkkfaeeh...ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + +++p +f+++    + +  e++t++l+      r W vkl      +r+ ++ GWk+F+   +L+ gDf++F++ ++  f  +v+vf+
  Dca17527.1  28 NSFSIPTSFVKHLeydDDD--ETVTVVLMCDYQphRHWVVKL-----ESRVCFGVGWKDFCLHLDLRIGDFLLFTYLSHLLF--HVTVFD 108
                 559*******655975434..45666666544445*******.....557899**********************9875555..898887 PP
2B3413.4e-131502261087
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 + ++++++lp +f+++ +++  ++ ++++ de+ r+W+v l  ++++   ++ +GW++  +ang k gD++ F+l + 
  Dca17527.1 150 SIQKSIIYLPAHFVRQSQLE-GRKCQVKIVDEEDRTWKVGLGCKRSKPISYICRGWRDVQNANGFKMGDVLCFQLLQA 226
                 5677889*******999666.44558***************6555555577888********************8763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1511109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1614109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.33515110IPR003340B3 DNA binding domain
CDDcd100171.00E-1216108No hitNo description
SMARTSM010196.1E-818110IPR003340B3 DNA binding domain
PfamPF023621.6E-728108IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166141237IPR003340B3 DNA binding domain
SMARTSM010190.0016141238IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-13141241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-10150232IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-10151232IPR003340B3 DNA binding domain
CDDcd100179.63E-13153236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRMEGGTGHS NKHHNRRFIQ PLLPDFLNSF SIPTSFVKHL EYDDDDETVT VVLMCDYQPH  60
RHWVVKLESR VCFGVGWKDF CLHLDLRIGD FLLFTYLSHL LFHVTVFDSA SSCHRTFPSP  120
TPNNIIGEQS NTAHSFQQFL SCRLNLRFYS IQKSIIYLPA HFVRQSQLEG RKCQVKIVDE  180
EDRTWKVGLG CKRSKPISYI CRGWRDVQNA NGFKMGDVLC FQLLQAGEYP ILKCYRDKQE  240
KENKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-24B3 family protein