PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca17596.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 110aa MW: 12776.8 Da PI: 10.6482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca17596.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgks k + ++H +++ Dca17596.1 52 FACRKCGKSLAVKGDWRTHEKNC 74 78*****************9987 PP
2	zf-C2H2	11.1	0.0012	82	97	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg F++k +Lk Hir Dca17596.1 82 CGSDFKHKRSLKDHIR 97 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.27E-6	33	72	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-4	48	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MKQIQQEITH GYSAIQYVSG CKNNINHPKS KPLKDFRTLQ THYKRKHGHK PFACRKCGKS 60 LAVKGDWRTH EKNCGKRWLC LCGSDFKHKR SLKDHIRAFG SGHDTFPPFL

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021743561.1	1e-57	protein TRANSPARENT TESTA 1-like
Refseq	XP_021845353.1	1e-57	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	2e-52	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2N9EYG1	9e-55	A0A2N9EYG1_FAGSY; Uncharacterized protein
STRING	XP_010676259.1	1e-56	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	7e-55	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]