PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17660.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 25092.4 Da    PI: 8.2436
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17660.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvt+skRr+gi+KKA E+ vLC+a+v++iifs++gk++ y 
  Dca17660.1  9 KRIENSTNRQVTYSKRRTGIIKKATEITVLCEAKVSLIIFSNNGKMHSYH 58
                79*********************************************996 PP
2K-box83.35.3e-2871169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 y+k sgk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL +++L++Le++Le++l  +R+k++e++++  ++ ++ e+e+++ + + +k+ +
  Dca17660.1  71 YHKVSGKRLWDAKHENLSNEIDRVKKENDNMQIELRHLKGEDIGSLPFQDLMRLEDALENGLVGVREKQMEIYKMYKKNHRMLEEENNQLTYMVHKQEM 169
                 78999**********************************************************************************999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.866161IPR002100Transcription factor, MADS-box
CDDcd002659.22E-38280No hitNo description
SuperFamilySSF554554.45E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2082164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.41284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRTGIIK KATEITVLCE AKVSLIIFSN NGKMHSYHSS  60
DSSVEEILDQ YHKVSGKRLW DAKHENLSNE IDRVKKENDN MQIELRHLKG EDIGSLPFQD  120
LMRLEDALEN GLVGVREKQM EIYKMYKKNH RMLEEENNQL TYMVHKQEME RMDGGGVCNN  180
NPQDHQRDYS YNQHHNPFGF RVQPMQPNLQ DRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16175173MEF2 CHIMERA
6byy_B3e-16175173MEF2 CHIMERA
6byy_C3e-16175173MEF2 CHIMERA
6byy_D3e-16175173MEF2 CHIMERA
6bz1_A2e-16191183MEF2 CHIMERA
6bz1_B2e-16191183MEF2 CHIMERA
6bz1_C2e-16191183MEF2 CHIMERA
6bz1_D2e-16191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677661.11e-109PREDICTED: floral homeotic protein PMADS 2
SwissprotQ0HA254e-96MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ413531e-123Q41353_SILLA; SLM2 protein
STRINGXP_010677661.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]