PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca17720.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 219aa    MW: 24881.9 Da    PI: 4.8638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca17720.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131681148
                     TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l d++ q+G                      W+ Ia+ ++ gRt++++k+ w++yl
       Dca17720.1 16 RGLWSPEEDQRLQDYILQFGVSswtslpsnavyitetrvtiIWSQIAKQLP-GRTDNEIKNAWHSYL 81
                     788************************************************.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4421185IPR017930Myb domain
SMARTSM007177.3E-101583IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-191582IPR009057Homeodomain-like
PfamPF002494.9E-101681IPR001005SANT/Myb domain
SuperFamilySSF466893.68E-111682IPR009057Homeodomain-like
CDDcd001678.68E-81981No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGLIKTTEKL NRKHKRGLWS PEEDQRLQDY ILQFGVSSWT SLPSNAVYIT ETRVTIIWSQ  60
IAKQLPGRTD NEIKNAWHSY LKKKAAKKSE KTAINPKPKT LNFSCKEEDV SPSIVTTTNA  120
VSRIELEPVK IPFDQTMPKI VFSEWLTTDN YNNSTVQNDE LVYDADLMEC FRFDDEGSSI  180
SIDKLYHGEF ANDFIDQSSG VGSCCFIGAS EENAAFTEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-21myb domain protein 19