PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca18529.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 241aa MW: 27147.4 Da PI: 6.4025

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca18529.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3e-13	171	216	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq Dca18529.1 171 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 216 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.659	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.19E-16	168	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-12	169	220	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-17	170	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-13	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-10	171	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQEDPPTELS RLGGLARFRS APATWLDALL SDDHHTSSTF THLLSSDDRN PAPAHPLRPE 60 VYPKPEAHDP VFDDGFQRMN SSPADFLGAN IEGYFAGFGA PATTSYDDGS PVRKRFRESD 120 VDQLSPSFVG QRRGELTTAN SLVEMEMEKL LEDSVACRVR AKRGCATHPR SIAERVRRTR 180 ISDRIRKLQE LVPNMDKQTN TADMLEEAVE YVKTLQRQIQ DLTEQQKKCK CMAMSLHSND 240 K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021767187.1	3e-96	transcription factor bHLH81-like
Swissprot	Q9M0R0	2e-67	BH081_ARATH; Transcription factor bHLH81
TrEMBL	A0A0K9QRI5	1e-92	A0A0K9QRI5_SPIOL; Uncharacterized protein
STRING	XP_010682704.1	2e-89	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	4e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]