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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dca18790.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 266aa MW: 30481.2 Da PI: 10.2476 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 57 | 6.3e-18 | 75 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY++YA +GF+ r +s+++ r + +++ +vC+++g+re+ +k ++ +rr+ + tr+gCka+++ + dg + v ++ + HnH l+
Dca18790.1 75 SFYRAYAFACGFTPRLYTSRHR-RGRVLKNKILVCNRQGFRENPQKLrdpscvesKKVRRRKVKITRVGCKACINFCLV-DGAFTVVEFYESHNHRLF 170
5****************99987.7888999*************99999*****987888889999*************9.****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.7E-14 | 75 | 170 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 266 aa Download sequence Send to blast |
MIDSQPQNDD TISGSKSGQY VPLTPTKQSV SSIPGQYPLV LSHTPGGSEE WVRRVEHQFM 60 PSVGKVFPSL DEAVSFYRAY AFACGFTPRL YTSRHRRGRV LKNKILVCNR QGFRENPQKL 120 RDPSCVESKK VRRRKVKITR VGCKACINFC LVDGAFTVVE FYESHNHRLF SANERDFEKV 180 PRNLTLFHKQ LIVDHLKLNI GASKSFRICK EYVNGYSNVG ASLLDLKNFQ RDIKCFIGEK 240 DAQLFIDRFQ MMSVSKRGFL LLVSCR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 128 | 134 | KKVRRRK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 2e-08 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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