PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19084.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25525 Da    PI: 10.4855
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19084.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1867121256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q+ +Le++F+++ +++++++  LA++++L  rqV vWFqNrRa+ k
  Dca19084.1  67 RKKLRLSKDQIMVLEQAFREHTTLNTKQKMALARQVNLRPRQVEVWFQNRRARTK 121
                 788899***********************************************98 PP
2HD-ZIP_I/II118.34.4e-3867155189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlsk+q+ +LE+ F+e+++L++++K++lar+++l+prqv+vWFqnrRARtk+kq+E+d+e+L+r +++l+e+n++L+kev+eLr+
   Dca19084.1  67 RKKLRLSKDQIMVLEQAFREHTTLNTKQKMALARQVNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRFCESLTEQNRKLQKEVQELRS 155
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-1951121IPR009057Homeodomain-like
SuperFamilySSF466895.56E-1953124IPR009057Homeodomain-like
PROSITE profilePS5007117.13563123IPR001356Homeobox domain
SMARTSM003894.3E-1565127IPR001356Homeobox domain
PfamPF000461.3E-1567121IPR001356Homeobox domain
CDDcd000862.57E-1467124No hitNo description
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PfamPF021839.8E-10123157IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-19123166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQKPALVIDL EEVEMNKVVV DSPNSTLSSS AAATGKRVGC FRGGDVISDD DEGGSGGGGG  60
GSHGGERKKL RLSKDQIMVL EQAFREHTTL NTKQKMALAR QVNLRPRQVE VWFQNRRART  120
KLKQTEVDCE YLRRFCESLT EQNRKLQKEV QELRSMKLPS VHAKSSTVNM CPSCKTVSLS  180
SSSLPSPSTN STGVLHRPVP LNLKKLSLSI NNSNNNSNSN GSKILKSSHV PHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863985.15e-71homeobox-leucine zipper protein HOX28
SwissprotP466026e-55HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A3L6THC58e-59A0A3L6THC5_PANMI; Homeobox-leucine zipper protein HOX1 isoform X2
STRINGXP_010692080.12e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.17e-52homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]