PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19104.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 435aa MW: 47173 Da PI: 5.0524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19104.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.2e-05	271	294	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++s++ +Ka++L ++++Y+k+Lq Dca19104.1 271 HNQSERTDKASMLDEVIDYMKQLQ 294 56999******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.1E-5	271	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.71E-4	271	298	No hit	No description
SuperFamily	SSF47459	3.79E-6	272	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MTQNQCVPNW DLDNVGPTLH APPPPPPPPP LPPLSRSTNS LSAAHDTSMQ DYEMAELAWE 60 NGQLTMHGLG LPRTDKPSTL TGGTLESIVN QATHHKLQLS PLTPPLEYDD DLVPLFNPNP 120 VAHNRALGDV ATAVDALVPT ANNRDSVEVS KQVMGCSTRV GSCSVAVGGM PVNSDWSVSA 180 SGSDRWQHGV KRTADDTCEN LRSMTNTEMT SASFGASLDN TTRTVTFDDR DHDSVCHSRP 240 EREMVEDEDY QKKGTGKSTS SIKRSRAAAV HNQSERTDKA SMLDEVIDYM KQLQSQVQMF 300 NTMRLPSMMM PLAIQQQLLQ MSMMAPMGMG MGLGMGMNMD QMNQLNVGRS NVSGMPPTVF 360 NPAAFMSLAP TTGVGDRATP QQPSSMVPTD PLATFLAGQS QQSSTMDAYT RMAAMYQQLQ 420 QQQQIPNQGT GGSNR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MTQNQCVPNW DLDNVGPTLH APPPPPPPPP LPPLSRSTNS LSAAHDTSMQ DYEMAELAWE  60
NGQLTMHGLG LPRTDKPSTL TGGTLESIVN QATHHKLQLS PLTPPLEYDD DLVPLFNPNP  120
VAHNRALGDV ATAVDALVPT ANNRDSVEVS KQVMGCSTRV GSCSVAVGGM PVNSDWSVSA  180
SGSDRWQHGV KRTADDTCEN LRSMTNTEMT SASFGASLDN TTRTVTFDDR DHDSVCHSRP  240
EREMVEDEDY QKKGTGKSTS SIKRSRAAAV HNQSERTDKA SMLDEVIDYM KQLQSQVQMF  300
NTMRLPSMMM PLAIQQQLLQ MSMMAPMGMG MGLGMGMNMD QMNQLNVGRS NVSGMPPTVF  360
NPAAFMSLAP TTGVGDRATP QQPSSMVPTD PLATFLAGQS QQSSTMDAYT RMAAMYQQLQ  420
QQQQIPNQGT GGSNR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582839.1	1e-87	transcription factor UNE10
TrEMBL	B9RD58	1e-82	B9RD58_RICCO; DNA binding protein, putative
STRING	XP_002511647.1	2e-83	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-41	bHLH family protein