PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19110.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

YABBY

Protein Properties

Length: 183aa MW: 19921.5 Da PI: 7.3424

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19110.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	81.2	3.2e-25	24	135	3	99
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas........qllaaeshldeslkee...........lleelkveeenl 82 s s+q+Cyv+C+fC+t+lavsvPs++lfk+vtvrCGhC +l s n+ ka + +++l++ llee ++++ nl Dca19110.1 24 QLSPSDQLCYVHCTFCDTVLAVSVPSSCLFKTVTVRCGHCGNLWSANMLKALllpsppptPPSPLSNNLQH----LppsnffssphnLLEEIRNTTPNL 118 56789****************************************99988873333332211122222222....134557776666666666666666 PP YABBY 83 ksnvekeesastsvsse 99 +n+ ++++++ +s+ Dca19110.1 119 MMNNNNNNNHQGMMSNC 135 66655555554444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-25	27	126	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSSSSSTTT GSVGGPGFDT PDHQLSPSDQ LCYVHCTFCD TVLAVSVPSS CLFKTVTVRC 60 GHCGNLWSAN MLKALLLPSP PPTPPSPLSN NLQHLPPSNF FSSPHNLLEE IRNTTPNLMM 120 NNNNNNNHQG MMSNCNNNNE QGGGGGGGGM MMPMRGMEHH HQFHPFHHDI PKPPPVNRRM 180 FLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375773.1	1e-36	PREDICTED: axial regulator YABBY 1 isoform X2
Swissprot	Q9XFB1	7e-24	YAB3_ARATH; Axial regulator YABBY 3
TrEMBL	A0A498JHG4	1e-34	A0A498JHG4_MALDO; Uncharacterized protein
STRING	XP_010692186.1	7e-35	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	9e-21	YABBY family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yadav RK, et al. Plant stem cell maintenance involves direct transcriptional repression of differentiation program. Mol. Syst. Biol., 2013. 9: p. 654 [PMID:23549482]