PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19130.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 232aa    MW: 25840.8 Da    PI: 7.3247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19130.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.54e-37261261100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf aeq + +fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  r+rdPvyG+v+++++lqqq+ ++++ela+++
  Dca19130.1  26 PCGACKYLRRKCVKGCIFAPYFDAEQgTIHFAAVHKVFGASNASKLLLKIPVNRRVDAVVTLCYEALSRVRDPVYGCVSHLFSLQQQVLNMQSELASVQ 124
                 7************************9889*******************************************************************999 PP

      DUF260  99 ee 100
                 ++
  Dca19130.1 125 AR 126
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.33825127IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-3626124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSNNIHHQHH WPNNNNNNNS NNNNGPCGAC KYLRRKCVKG CIFAPYFDAE QGTIHFAAVH  60
KVFGASNASK LLLKIPVNRR VDAVVTLCYE ALSRVRDPVY GCVSHLFSLQ QQVLNMQSEL  120
ASVQARLSTL QHTTQTFPTA NNTPQAFFDQ ISSSSSSTTT ITTTSSMPSV DNVSHYYSQP  180
MTSTFASTAA EFNGLTDNHH DDMFMEDDDL QTLTREFVTR YLPGVKLKSE PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34191274111LOB family transfactor Ramosa2.1
5ly0_B3e-34191274111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.12e-97PREDICTED: LOB domain-containing protein 19
SwissprotO221324e-63LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0K9QWU87e-92A0A0K9QWU8_SPIOL; Uncharacterized protein
STRINGXP_010692268.19e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.19e-65LOB domain-containing protein 19