PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19176.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 864aa    MW: 93670.5 Da    PI: 6.072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19176.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29.3e-21166221156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Dca19176.1 166 KKRYHRHTPQQIQELESVFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 221
                 688999***********************************************999 PP
2START200.95.6e-633766011206
                 HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 ela++a++elvk+a+ +ep+W +s      e+ n de+++ f +  +     + +ea+r++g+v+ ++  lve+l+d + +W+e+++    +a+t++vi
  Dca19176.1 376 ELALSAMDELVKMAQTDEPVWLRSIdcggrEIFNHDEYMRCFNSCIGlkpngFVTEASRETGMVIINSLALVETLMDAN-RWTEMFPgmiaRASTTDVI 473
                 57899*************************************88777999999**************************.******************* PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 ssg      galqlm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d  ++++  + +v +++lpSg+++++++ng+skvtwveh++++++ +
  Dca19176.1 474 SSGmggtrnGALQLMHAELQVLSPLVPvRAVNFLRFCKQHAEGVWAVVDVSIDCIRENSGAPTYVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSNI 572
                 **********************************************************99*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+l+r+l++ g+ +ga++w atlqrqce+
  Dca19176.1 573 HQLYRPLISAGMGFGAQRWIATLQRQCEC 601
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-20153223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21162231IPR009057Homeodomain-like
PROSITE profilePS5007117.362163223IPR001356Homeobox domain
SMARTSM003891.2E-17164227IPR001356Homeobox domain
CDDcd000868.60E-19165223No hitNo description
PfamPF000462.7E-18166221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
PROSITE profilePS5084844.598367604IPR002913START domain
SuperFamilySSF559611.09E-33368601No hitNo description
CDDcd088759.37E-123371600No hitNo description
PfamPF018523.5E-55376601IPR002913START domain
SMARTSM002345.0E-46376601IPR002913START domain
SuperFamilySSF559611.74E-24630857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MSFGGFLNNC GGGSCGGSGG GNNVDSGGGG GGGRIGVGDI SYIHNNHSNN MPPGAITQSP  60
HLVGPTSSFN KSPSSFFNSP GLSLALQTGM EGQEVGRLRD HNNYEGNNNE SESNNNINNN  120
NNNNNGGVIG IRRSREEEHD SRSGSDNLEG ASGDDQDIAD LPPSRKKRYH RHTPQQIQEL  180
ESVFKECPHP DEKQRLELSK RLCLETRQVK FWFQNRRTQM KTQLERHENS ILRQENDKIR  240
AENMSIREAM RNPMCSNCGG PAIIGDISME EQHLRIENVR LKDELDRVCV LASKFLGRPI  300
SSLSTLSTMS GSIAPHMPNS ALELGVGMSN GYGNSMTTVS HTLPLAPDFC NGISPTKASG  360
SLGGIETSLE RSMYLELALS AMDELVKMAQ TDEPVWLRSI DCGGREIFNH DEYMRCFNSC  420
IGLKPNGFVT EASRETGMVI INSLALVETL MDANRWTEMF PGMIARASTT DVISSGMGGT  480
RNGALQLMHA ELQVLSPLVP VRAVNFLRFC KQHAEGVWAV VDVSIDCIRE NSGAPTYVNC  540
RRLPSGCVVQ DMPNGYSKVT WVEHAEYDDS NIHQLYRPLI SAGMGFGAQR WIATLQRQCE  600
CLAILMSSNV PSGDNTAITA SGRRSMLKLA QRMTNNFCVG VCASTVHQWN KLQMGNVDED  660
VRVMTRKSVD DPGEPPGIVL SAATSVWLPV SPQRLFDFLR DDRLRSEWDI LSNGGPMQEM  720
AHIAKGQDQG NCVSLLRAGA MNPNQSSMLI LQETCTDASG SLVVYAPVDI PAMHVVMNGG  780
DSAYVALLPS GFSIVPDGPA SSGSNSSGQI SGLNRVGGSL LTVAFQILVN NLPTAKLTVE  840
SVETVNNLIS CTVQKIKAAL HCEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671720.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0K9QLI30.0A0A0K9QLI3_SPIOL; Uncharacterized protein
STRINGXP_010671720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]