PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19214.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 235aa MW: 26290.7 Da PI: 6.6858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19214.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	159	199	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Dca19214.1 159 RRRRQRINERLRILQGLVPNG-----TKVDISTMLEEAVHYVKFLQ 199 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-14	149	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.723	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-12	154	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-8	159	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.89E-6	165	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MWSKSAMYET NPLDLSPCSH FAFPPEHESS VLLGNDAKLA WPAIDDLISD PDVELKTKRS 60 ALEVADSGAL VTPKKKARVS RNRGKKNVQS NEAEEISHSQ SSTHCGSSTL EKSIEESNAF 120 QEMSDGENSA VKEVVEVTLK GKKRASRGEA TDPQSLYARR RRQRINERLR ILQGLVPNGT 180 KVDISTMLEE AVHYVKFLQL QIKLLSSDDL WMYAPLAYNG VDINLYRNIS PFLLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	161	KKRASRGEATDPQSLYARRRR

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688176.1	4e-74	PREDICTED: transcription factor PIF3
Swissprot	Q84WK0	1e-52	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A166AEN7	7e-60	A0A166AEN7_DAUCS; Uncharacterized protein
STRING	XP_010688176.1	1e-73	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27740.1	3e-41	root hair defective 6-like 4

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]