PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19221.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WOX
Protein Properties Length: 229aa    MW: 26527.7 Da    PI: 9.6571
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19221.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2179138357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Dca19221.1  79 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEQITEQLakygKIEGKNVFYWFQNHKARERQ 138
                 7*****************99**************************************97 PP
2Wus_type_Homeobox118.53e-3879140465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqkq
         Dca19221.1  79 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITEQLAKYGKIEGKNVFYWFQNHKARERQKQ 140
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.41474139IPR001356Homeobox domain
SuperFamilySSF466895.56E-1276143IPR009057Homeodomain-like
SMARTSM003892.4E-676143IPR001356Homeobox domain
CDDcd000862.32E-479140No hitNo description
PfamPF000462.9E-1979138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-880138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MIHDLPSLTL GCKRFRPLAP KLNANNNVNV NVTGNGNSFD LKSFIKPENE IRKFASYDEK  60
RDSASHHHVQ SVETHPGGTR WNPTQEQIGI LEMLYKGGMR TPNAQQIEQI TEQLAKYGKI  120
EGKNVFYWFQ NHKARERQKQ KRNILGLTLT TTTTTPTTPT SHNDASILAL SFDARVENEQ  180
KQLETSPYKR KLREWTFEYT TEDNNVKKKN QDYEGDQTLE LFPLHPERR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600785.12e-90WUSCHEL-related homeobox 4-like
SwissprotQ6X7J92e-63WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A2C9U0E65e-89A0A2C9U0E6_MANES; Uncharacterized protein
STRINGXP_006473292.13e-86(Citrus sinensis)
STRINGXP_006434726.13e-86(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.15e-62WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]