PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19236.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 526aa    MW: 57371.1 Da    PI: 9.5789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19236.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31276333359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+ver+ +d +++++tYeg+Hnh+
  Dca19236.1 276 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrNCPARKHVERALDDSSMLVVTYEGDHNHP 333
                 99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-16229272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-32262334IPR003657WRKY domain
PROSITE profilePS5081129.608269335IPR003657WRKY domain
SuperFamilySSF1182902.09E-26271334IPR003657WRKY domain
SMARTSM007742.1E-37274334IPR003657WRKY domain
PfamPF031062.4E-26276333IPR003657WRKY domain
PfamPF077276.9E-11486526IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MAVDFMVGPY ATASTTTATT DSFAARMEDN AVREATAAGL QSVEKLIQLL SQSQNINTRP  60
HHNHNQHQAS STSFEYKAVA DVAVNKFKKV ISLLDRSRTG HARFRRGPLS PAPATETEPK  120
KLILDSKPTS GSAFRRVYSS SQIQRLPPLP HSIVKPVAAA AAVERKESCT TINFSTSSTP  180
ISVATASYIS SLTGDTDSVQ PSMSSGFQIT NMSQVSSVGK PPLSSNSLKR KCSSVDDAKC  240
GASSGRCHCS KRRKSRMKRV VRVPAISVKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC  300
SSVRNCPARK HVERALDDSS MLVVTYEGDH NHPQHVTDAT PPGSPFPTPL PSPSTPPSPP  360
SMPPSPQPIS PQPIPMTDLQ PHVPPQPSPS FDPPPRRSVR TFDPPSYLSA YQYNIPSHQP  420
NASCNCTLTS LCCPCPTTTP THVSTISCLN ASVTLHVQEP LNYEQAVIYP EWKDAIAAEF  480
SALEANDTWS LCPLPPGKKA IHCKWVFKVK HKSDETIERY KARLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19262332271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740075.11e-159probable WRKY transcription factor 7
RefseqXP_021851375.11e-159probable WRKY transcription factor 7
SwissprotQ9STX04e-97WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ791e-159A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGXP_010688592.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-88WRKY DNA-binding protein 7